Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_C02
         (1167 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.4  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 648 PRPAPXPXQXRPPXPPXP 701
           P+P P     R P PP P
Sbjct: 253 PKPRPTKVSRRKPRPPRP 270


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 806 PXPPAPXXXTPXAPXPRNQHD 868
           P PP P    P  P   N HD
Sbjct: 736 PPPPHPHHQPPRNPVGTNPHD 756


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 806 PXPPAPXXXTPXAPXPRNQHD 868
           P PP P    P  P   N HD
Sbjct: 628 PPPPHPHHQPPRNPVGTNPHD 648


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.130    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,150
Number of Sequences: 336
Number of extensions: 1482
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34022010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)