Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_C02
(1167 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.020
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.076
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.31
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.94
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 8.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.076
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +3
Query: 381 PRQXXXTPAPXXTPXNQXXRPPTPXAXXXPXAPPSPXXPDXGPARQDAPPP 533
P TPAP P PP P P PP P GP PPP
Sbjct: 737 PAVIVPTPAPAPIPVP----PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.41
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 636 PXTXPRPAPXPXQXRPPXPPXPPXXTXXAXXHXXPXP 746
P P P P P PP PP PP P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect(2) = 0.020
Identities = 15/52 (28%), Positives = 17/52 (32%)
Frame = +3
Query: 609 PPXAXXXXRPXTXPRPAPXPXQXRPPXPPXPPXXTXXAXXHXXPXPXXXXGP 764
PP A P P P PP PP PP + + P P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 23.0 bits (47), Expect(2) = 0.020
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +3
Query: 468 PXAPPSPXXPDXGPARQDAPPP 533
P PP+ P PA PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.076
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +3
Query: 372 TAXPRQXXXTPAPXXTPXNQXXRPPTPXAXXXPXAPPSP-XXPDXGPARQDAPPP 533
+A PR P+P P PP P + P P +P P P+ A PP
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 28.3 bits (60), Expect = 2.2
Identities = 34/131 (25%), Positives = 37/131 (28%), Gaps = 3/131 (2%)
Frame = +3
Query: 441 PPTPXAXXXP--XAPPSPXXPDXGPARQDAPPPXGXXXXXXXXXXXXXXXXNXXXGRXPP 614
PPTP + P APP P P PA APP PP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPA--SAPP--------------IPSKAPPIPSSLPP 173
Query: 615 XAXXXXRPXTXPRPAPXPXQXRPPXPP-XPPXXTXXAXXHXXPXPXXXXGPXTXRPARXT 791
A P P AP PP PP PP A P T
Sbjct: 174 PA-QPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVT 232
Query: 792 XTAPHXPRQRP 824
+P P + P
Sbjct: 233 SESPKFPNRGP 243
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.1 bits (67), Expect = 0.31
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 703 GGXGGXGGRXXXGXGAGRGXVXGRXXXXAXGGXRP 599
GG GG GGR G G GRG R G P
Sbjct: 457 GGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAP 491
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.94
Identities = 36/165 (21%), Positives = 46/165 (27%), Gaps = 3/165 (1%)
Frame = +3
Query: 402 PAPXXTPXNQXXR--PPTPXAXXXPXAPPSPXXPDXGPARQDAP-PPXGXXXXXXXXXXX 572
P P N + PP P P P +P PA AP PP
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNV 1492
Query: 573 XXXXXNXXXGRXPPXAXXXXRPXTXPRPAPXPXQXRPPXPPXPPXXTXXAXXHXXPXPXX 752
+ PP + P T P P Q P P A H
Sbjct: 1493 PVPSMIPSVAQQPPSS---VAPATAPSSTLPPSQSSFAHVPSP---APPAPQHPSAAALS 1546
Query: 753 XXGPXTXRPARXTXTAPHXPRQRPXXXHPTHRSHATNTTQXXTXR 887
P R + AP P Q+P + + T+Q + R
Sbjct: 1547 SAPADNSMPHRSSPYAPQEPVQKPQAINNIAPATNLGTSQSFSPR 1591
Score = 23.4 bits (48), Expect(2) = 2.1
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = +3
Query: 447 TPXAXXXPXAPPSPXXPDXGPARQDAPPP 533
TP APP P P PPP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPP 1717
Score = 23.0 bits (47), Expect(2) = 2.1
Identities = 10/28 (35%), Positives = 10/28 (35%)
Frame = +3
Query: 609 PPXAXXXXRPXTXPRPAPXPXQXRPPXP 692
PP P P PA P PP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 1058 PDPHXPXXXPTPAKNPPXXPXXSAXAPPXP 1147
P P PTP+ P P +A APP P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +2
Query: 677 PPPXPAXXAXXNXAXXXTPXPXXXXXXRXPXGXXSTPXXHRATPXPPAPXXXTPXAPXP 853
PPP PA + P P P G P A P P P P P P
Sbjct: 1063 PPPVPAPSSEI----PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +3
Query: 399 TPAPXXTPXNQXXRPPTPXAXXXPXAPPSPXXPDXGPARQDAPPP 533
T P TP P P A P PS P R P P
Sbjct: 1215 TAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 2.2
Identities = 32/141 (22%), Positives = 37/141 (26%)
Frame = +3
Query: 402 PAPXXTPXNQXXRPPTPXAXXXPXAPPSPXXPDXGPARQDAPPPXGXXXXXXXXXXXXXX 581
P P +PP PP P P A PP G
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA-- 369
Query: 582 XXNXXXGRXPPXAXXXXRPXTXPRPAPXPXQXRPPXPPXPPXXTXXAXXHXXPXPXXXXG 761
GR PP R + P PAP P P PP + P P
Sbjct: 370 ---PSTGRQPP-PLSSSRAVSNP-PAPPPAIPGRSAPALPPLGN-ASRTSTPPVPTPPSL 423
Query: 762 PXTXRPARXTXTAPHXPRQRP 824
P + P+ P P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAP 444
Score = 26.2 bits (55), Expect = 8.7
Identities = 22/109 (20%), Positives = 25/109 (22%), Gaps = 1/109 (0%)
Frame = +3
Query: 381 PRQXXXTPAPXXTPXNQXXRPPTPXAXXXPXAPPSPXXPDXGPARQDAPPP-XGXXXXXX 557
PR P PP P + P P + APPP
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPA 402
Query: 558 XXXXXXXXXXNXXXGRXPPXAXXXXRPXTXPRPAPXPXQXRPPXPPXPP 704
+ PP P P P P PP PP
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 5.0
Identities = 24/103 (23%), Positives = 27/103 (26%)
Frame = +3
Query: 405 APXXTPXNQXXRPPTPXAXXXPXAPPSPXXPDXGPARQDAPPPXGXXXXXXXXXXXXXXX 584
AP + N PP AP + D P PPP
Sbjct: 155 APTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYS 214
Query: 585 XNXXXGRXPPXAXXXXRPXTXPRPAPXPXQXRPPXPPXPPXXT 713
P + P PAP P PP P PP T
Sbjct: 215 SGRAVSPEIPPTYTPKQ--ADPLPAPPP----PPPPTLPPQST 251
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 636 PXTXPRPAPXPXQXRPPXPPXPP 704
P P P P P PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -3
Query: 703 GGXGGXGGRXXXGXGAG-RGXVXGRXXXXAXGGXR 602
G GG GG G G G RG G + GG R
Sbjct: 149 GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFR 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.130 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,679
Number of Sequences: 5004
Number of extensions: 19322
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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