Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B24
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   7.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.8  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
 Frame = +3

Query: 792 PXPXPPPXPPXXXXXPPXXPXPX-PXPPXXPPXPXXP 899
           P P  PP        PP    P  P PP  PP    P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 780 PPXPPXPXPPPXPP 821
           P  PP P PP  PP
Sbjct: 178 PQVPPLPLPPIFPP 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 780 PPXPPXPXPPP 812
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 183 SGNGYEPIDNR--PYIVNPPKDYNPNGNGYE 269
           S +G++  D    P+IV  P++ NP+   Y+
Sbjct: 179 SHSGFQRSDGTFGPFIVRVPEEDNPHAKLYD 209


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 868 PXPXPPXPXPPP 903
           P P P  P PPP
Sbjct: 205 PEPVPSTPYPPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,949
Number of Sequences: 336
Number of extensions: 5782
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)