Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B24
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.24 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.74 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +3

Query: 783 PXPPXPXPPPXPPXXXXXPPXXPXPXPXPPXXPPXPXXPPXXPPXXXP 926
           P    P P P P      P     P P      P P  PP  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQG---PPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +2

Query: 590 PPPPPLXXPXPPPXXXXPXPXXXPPXXPXP 679
           P P P   P  P     P P   PP    P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 728 PXXXXXPPXPPPXXPXXPPXXPXPXPPPXXP 820
           P     P  P    P  P   P P  PP  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/40 (27%), Positives = 11/40 (27%)
 Frame = +1

Query: 778 PPXXPXXXXPPXXPXXXXXPXPXXXXPXPXPXPXPPXPXP 897
           P   P     P  P     P P    P   P   PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 874 PXPPXPXPPPXXPPXPXP 927
           P  P   PPP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 789 PPXPXPPPXPP 821
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 880 PPXPXPPPXXPPXPXP 927
           PP P PPP  P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 780 PPXPPXPXPPP 812
           PP P  P PPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 284  CILRGPSPRPTLLQA 328
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 205 LTTARTSLILPKTTTLMETATNLSTTVHITWTLPKADLTSSLPLS 339
           +TT  T+     TTT   T  N +     T   P+ D      LS
Sbjct: 658 ITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKELS 702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,870
Number of Sequences: 438
Number of extensions: 14670
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)