Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_B20
(906 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 103 3e-23
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 103 3e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 79 9e-16
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 43 5e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 36 0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 30 0.39
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.52
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 6.4
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 103 bits (248), Expect = 3e-23
Identities = 59/110 (53%), Positives = 66/110 (60%)
Frame = +1
Query: 178 MVXFTVXXXRGXXXXXRXXRNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTR 357
MV FT R RNMSVIAHVDHG STLTDSLV AGI + A AG RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 358 KDEXXRCXTIKSTAISMFFELEEXDLVFITXPDQRXKSEXXFLINLIDSP 507
DE R TIKSTAIS+F E+ + D+ + P FL+NLIDSP
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDMKDMKEP----ADGTDFLVNLIDSP 106
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 103 bits (248), Expect = 3e-23
Identities = 59/110 (53%), Positives = 66/110 (60%)
Frame = +1
Query: 178 MVXFTVXXXRGXXXXXRXXRNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTR 357
MV FT R RNMSVIAHVDHG STLTDSLV AGI + A AG RF DTR
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTR 60
Query: 358 KDEXXRCXTIKSTAISMFFELEEXDLVFITXPDQRXKSEXXFLINLIDSP 507
DE R TIKSTAIS+F E+ + D+ + P FL+NLIDSP
Sbjct: 61 ADEQERGVTIKSTAISLFAEMTDDDMKDMKEP----ADGTDFLVNLIDSP 106
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 79.0 bits (186), Expect = 9e-16
Identities = 43/91 (47%), Positives = 61/91 (67%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISMFF 414
RN +++AHVDHG +TL DSL++ GI + AG RF D R+DE R T+KS+AIS+FF
Sbjct: 20 RNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFF 79
Query: 415 ELEEXDLVFITXPDQRXKSEXXFLINLIDSP 507
++ I+ D++ + E +LINLIDSP
Sbjct: 80 KV-------ISQNDEK-RVEKDYLINLIDSP 102
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISMFF 414
RN +VIAH+DHG STL+D ++ G+ +F D + E R T+K+ SM +
Sbjct: 59 RNWAVIAHIDHGKSTLSDCILKLTGV-INEHNFRNQFLDKLEVERRRGITVKAQTCSMIY 117
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 36.3 bits (80), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXA--GAXAGXXRFTDTRKDEXXRCXTIKSTAISM 408
RN+ +IAH+D G +TLT+ ++ G + G D E R TI S AIS
Sbjct: 29 RNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAISF 88
Query: 409 FFELEEXDLV 438
+ + +L+
Sbjct: 89 TWRNQRINLI 98
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.30
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = +2
Query: 686 SXPPPXXXXTS-TXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPG 862
S P P S T + SPP PPP P PPP P P
Sbjct: 708 SSPSPLLPDVSDTVEEQQKLLLKSPPPPPP-AVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Query: 863 PPXXGXLXPP 892
PP PP
Sbjct: 767 PPGVAGAGPP 776
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 758 PXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
P P P P PPP PG P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXX-RFTDTRKDEXXRCXTIKSTAISM 408
R+ V H+ HG S L D LV R+TDT E R +IKST +++
Sbjct: 141 RSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLTL 199
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 238 NMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAI 402
N+ I HVDHG +TLT ++ A D +E R TI S +
Sbjct: 55 NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAHV 109
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAG 309
RN+ + AH+D G +T T+ ++ G
Sbjct: 60 RNIGISAHIDSGKTTFTERVLYYTG 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,909
Number of Sequences: 5004
Number of extensions: 26381
Number of successful extensions: 57
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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