Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_B20
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 131 8e-31
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 131 8e-31
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 60 2e-09
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 39 0.004
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 39 0.006
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 34 0.16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 34 0.16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 34 0.16
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 34 0.16
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.28
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.28
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.49
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.49
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.86
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 30 2.0
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 30 2.0
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 30 2.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.6
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 6.0
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 6.0
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 6.0
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.0
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 131 bits (316), Expect = 8e-31
Identities = 72/118 (61%), Positives = 79/118 (66%), Gaps = 8/118 (6%)
Frame = +1
Query: 178 MVXFTVXXXRGXXXXXRXXRNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTR 357
MV FTV R R RNMSVIAHVDHG STLTDSLVS AGI AG+ AG RFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 358 KDEXXRCXTIKSTAISMFFELEEXDLVFITXPDQ--------RXKSEXXFLINLIDSP 507
KDE RC TIKSTAIS+FFELE+ DL F+ +Q + + FLINLIDSP
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSP 118
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 131 bits (316), Expect = 8e-31
Identities = 72/118 (61%), Positives = 79/118 (66%), Gaps = 8/118 (6%)
Frame = +1
Query: 178 MVXFTVXXXRGXXXXXRXXRNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTR 357
MV FTV R R RNMSVIAHVDHG STLTDSLVS AGI AG+ AG RFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 358 KDEXXRCXTIKSTAISMFFELEEXDLVFITXPDQ--------RXKSEXXFLINLIDSP 507
KDE RC TIKSTAIS+FFELE+ DL F+ +Q + + FLINLIDSP
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSP 118
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISMFF 414
RN+ ++AHVDHG ++ DSLVS + + AG R+ D+R+DE R T+KS+ IS+
Sbjct: 21 RNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLC 80
Query: 415 E 417
E
Sbjct: 81 E 81
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISMFF 414
RN+ ++AHVDHG ++ DSLVS + + AG R+ D+R+DE R T+KS+ IS+
Sbjct: 21 RNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISLLC 80
Query: 415 E 417
E
Sbjct: 81 E 81
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISM 408
RN ++AHVDHG STL D L+ G G + D + E R T+K+ ++
Sbjct: 43 RNFGIVAHVDHGKSTLADRLLEMCG---AVPPGQKQMLDKLQVERERGITVKAQTAAL 97
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 38.7 bits (86), Expect = 0.006
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAGI--XAGAXAGXXRFTDTRKDEXXRCXTIKSTAISM 408
RN+ VIAHVD G +T+T+ L+ AG AG TD E R T++S A+++
Sbjct: 26 RNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVNL 85
Query: 409 FFELEEXDLV 438
++ +L+
Sbjct: 86 DWKGHRINLI 95
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 238 NMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKS 393
N+ I HVDHG +TLT ++ GA D +E R TI +
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 102
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 238 NMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKS 393
N+ I HVDHG +TLT ++ GA D +E R TI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.16
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 238 NMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTIKS 393
N+ I HVDHG +TLT ++ GA D +E R TI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/77 (31%), Positives = 25/77 (32%)
Frame = +2
Query: 659 P*PXWPRXPSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGX 838
P P P S PPP V PP PPP P PPP P
Sbjct: 531 PRPAPPPVSSIPPPPPIAGLLAANGTNVPI--PPPPPP---PLPQNLSGAPPPPPPPPPM 585
Query: 839 XXGSXXPGPPXXGXLXP 889
G P PP G + P
Sbjct: 586 LGGPPPPPPPPGGLMGP 602
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 654 SVPDPXGPVXXLXLHLXXXXPLPXXPXXXYXXVPPPXPP 770
+VP P P L +L P P P PPP PP
Sbjct: 557 NVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPP 595
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.28
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXA-GIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISMF 411
RN+++ H+ HG +T D L+ A RFTD E R +IKS +S
Sbjct: 133 RNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVS-- 190
Query: 412 FELEEXDLVFITXPDQRXKSEXXFLINLIDSP 507
I D R KS +L+N+ID+P
Sbjct: 191 ----------IVAQDSRSKS---YLLNIIDTP 209
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.1 bits (72), Expect = 0.28
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXA-GIXAGAXAGXXRFTDTRKDEXXRCXTIKSTAISMF 411
RN+++ H+ HG +T D L+ A RFTD E R +IKS +S
Sbjct: 8 RNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVS-- 65
Query: 412 FELEEXDLVFITXPDQRXKSEXXFLINLIDSP 507
I D R KS +L+N+ID+P
Sbjct: 66 ----------IVAQDSRSKS---YLLNIIDTP 84
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
PP PPP P + PPP P GPP G + PP
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRF------GPPGMGGMPPP 336
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSP-PXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXP 859
P PPP T +P P PPP P PPP PG P
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWP-------PPPPPPPG-----RTP 308
Query: 860 GPPXXGXLXPP 892
GPP + PP
Sbjct: 309 GPPGMPGMPPP 319
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
PP PP Y P PP P G P PP
Sbjct: 349 PPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
PP PPP P + PPP P GPP G + PP
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRF------GPPGMGGMPPP 346
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSP-PXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXP 859
P PPP T +P P PPP P PPP PG P
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWP-------PPPPPPPG-----RTP 318
Query: 860 GPPXXGXLXPP 892
GPP + PP
Sbjct: 319 GPPGMPGMPPP 329
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
PP PP Y P PP P G P PP
Sbjct: 359 PPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 31.5 bits (68), Expect = 0.86
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +2
Query: 665 PXWPRXPSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXX 844
P P+ P+ PPP + SPP PPP P + PPP P
Sbjct: 460 PTTPK-PAPPPPSRIPNPSPSPQPAEVSKSPPPPPPL----PPIATPSSVPPPPPPPPAL 514
Query: 845 GSXXPGPP 868
GPP
Sbjct: 515 EQEISGPP 522
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 749 CSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXP 889
C PP PPP P PPP P G GP G P
Sbjct: 37 CCPPPPPP----PPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYGP 79
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPG---XXXGSXXPGPPXXGXLXPP 892
PP PPP P PPP PG G P PP G PP
Sbjct: 726 PPPPPPPGGLPPITG---GPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
PP PPP P PPP PG G P PP
Sbjct: 758 PPPPPPPPGGCPPPP------PPPPPGGFKGGPPPPPP 789
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
PP PPP P PPP PG P PP PP
Sbjct: 742 PPPPPPPGGLPPISGG--PPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPG---XXXGSXXPGPPXXGXLXPP 892
PP PPP P PPP PG G P PP G PP
Sbjct: 726 PPPPPPPGGLPPITG---GPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
PP PPP P PPP PG G P PP
Sbjct: 758 PPPPPPPPGGCPPPP------PPPPPGGFKGGPPPPPP 789
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
PP PPP P PPP PG P PP PP
Sbjct: 742 PPPPPPPGGLPPISGG--PPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPG---XXXGSXXPGPPXXGXLXPP 892
PP PPP P PPP PG G P PP G PP
Sbjct: 309 PPPPPPPGGLPPITG---GPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
PP PPP P PPP PG G P PP
Sbjct: 341 PPPPPPPPGGCPPPP------PPPPPGGFKGGPPPPPP 372
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
PP PPP P PPP PG P PP PP
Sbjct: 325 PPPPPPPGGLPPISGG--PPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 752 SPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
SP PPP P LT PPP P G P PP
Sbjct: 1335 SPSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPP 1381
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 755 PPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXG 877
PP PP + P + PPP P G+ P PP G
Sbjct: 84 PPPPPMFAGGIPPPPPMMGGIPPPPP--MFGAPPPPPPPSG 122
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPG 862
P PPP TS +PP PPP PPP P G+ P
Sbjct: 198 PHAPPPPVPLTSNIPQ-------APPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPP 250
Query: 863 PP 868
PP
Sbjct: 251 PP 252
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPG 862
P PPP TS +PP PPP PPP P G+ P
Sbjct: 184 PHAPPPPVPLTSNIPQ-------APPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPP 236
Query: 863 PP 868
PP
Sbjct: 237 PP 238
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPG 862
P PPP TS +PP PPP PPP P G+ P
Sbjct: 184 PHAPPPPVPLTSNIPQ-------APPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPP 236
Query: 863 PP 868
PP
Sbjct: 237 PP 238
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 758 PXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPP 868
P PPP P PPP G G P PP
Sbjct: 520 PPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPP 556
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPG 862
PS P P T PP PPP PPP P + G
Sbjct: 588 PSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAG 647
Query: 863 PPXXGXLXPP 892
P PP
Sbjct: 648 APPPPPPPPP 657
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = +2
Query: 683 PSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPG 862
PS P P T PP PPP PPP P + G
Sbjct: 414 PSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAG 473
Query: 863 PPXXGXLXPP 892
P PP
Sbjct: 474 APPPPPPPPP 483
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 235 RNMSVIAHVDHGXSTLTDSLVSXAG 309
RN+ + AH+D G +T+T+ ++ AG
Sbjct: 45 RNIGISAHIDSGKTTVTERILYYAG 69
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +3
Query: 753 PPPXPPXXXPXXPXXXXXXXXXP-PXPXXXXXXPXXLXLXXXXLSPPP 893
PPP PP P P P P P P + ++PPP
Sbjct: 178 PPPRPPPQEPPKPVEQAAPPPPPAPMPVPVEKAPEPVPAPVEQIAPPP 225
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 674 PRXPSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPG 835
P P PPP T S P PPP P PPP PG
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPP--PLPPISSGAPPPPPPPPPG 817
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 674 PRXPSXPPPXXXXTSTXRXXXXVXXCSPPXPPPYXXXXPXXXXLTXXXPPPTPG 835
P P PPP T S P PPP P PPP PG
Sbjct: 766 PPPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPP--PLPPISSGAPPPPPPPPPG 817
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 238 NMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTI 387
N+ I H+DHG +TLT ++ A D K+E R TI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 238 NMSVIAHVDHGXSTLTDSLVSXAGIXAGAXAGXXRFTDTRKDEXXRCXTI 387
N+ I H+DHG +TLT ++ A D K+E R TI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/71 (29%), Positives = 21/71 (29%)
Frame = -1
Query: 867 GGPGXXXPXXXPGVGGGXXXVRXXXXGXXXXXGGGXGGEXXXTXXXXRXVEVXXXXGGGQ 688
GGPG G GGG G G G GG GGG
Sbjct: 51 GGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGG 110
Query: 687 XGXRGHXGQGR 655
G G G GR
Sbjct: 111 RGGGGGGGGGR 121
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 752 SPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
SPP PPP P + PPP G P PP G PP
Sbjct: 279 SPP-PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP-PPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 752 SPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
SPP PPP P + PPP G P PP G PP
Sbjct: 300 SPP-PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP-PPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 752 SPPXPPPYXXXXPXXXXLTXXXPPPTPGXXXGSXXPGPPXXGXLXPP 892
SPP PPP P + PPP G P PP G PP
Sbjct: 285 SPP-PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP-PPQAGGSPPP 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,405
Number of Sequences: 27780
Number of extensions: 217873
Number of successful extensions: 1041
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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