Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B20
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.23 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 241 MSVIAHVDHGXSTLTDSL 294
           ++++ HVDHG +TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 238 NMSVIAHVDHGXSTLTDSL 294
           N+  I HV HG ST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 364 EXXRCXTIKSTAISMFF 414
           E   C T+K +A+ M+F
Sbjct: 684 ENLTCATVKGSAVDMYF 700


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 346 TDTRKDEXXRCXTIKSTAIS 405
           +D RK    RC ++ STA S
Sbjct: 205 SDRRKGSIARCWSLDSTAAS 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,356
Number of Sequences: 438
Number of extensions: 3609
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)