Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B19
         (869 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14973-1|AAA85661.1|   56|Homo sapiens ribosomal protein S29 pro...    85   3e-16
L31610-1|AAB27426.1|   56|Homo sapiens protein ( Homo sapiens (c...    85   3e-16
BC035313-1|AAH35313.1|   56|Homo sapiens ribosomal protein S29 p...    85   3e-16
BC032813-1|AAH32813.1|   56|Homo sapiens ribosomal protein S29 p...    85   3e-16
AB061847-1|BAB79485.1|   56|Homo sapiens ribosomal protein S29 p...    85   3e-16
AB007165-1|BAA25827.1|   26|Homo sapiens ribosomal protein S29 p...    39   0.027

>U14973-1|AAA85661.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 37/56 (66%), Positives = 40/56 (71%)
 Frame = +1

Query: 145 MGXANXWXSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICXQCFXXXAHXXGFKXLD 312
           MG    + SHPR +GQGSRSCR CSNRHGLIRKYGLN+C QCF   A   GF  LD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>L31610-1|AAB27426.1|   56|Homo sapiens protein ( Homo sapiens
           (clone cori-1cl5) S29 ribosomal protein mRNA, complete
           cds. ).
          Length = 56

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 37/56 (66%), Positives = 40/56 (71%)
 Frame = +1

Query: 145 MGXANXWXSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICXQCFXXXAHXXGFKXLD 312
           MG    + SHPR +GQGSRSCR CSNRHGLIRKYGLN+C QCF   A   GF  LD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>BC035313-1|AAH35313.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 37/56 (66%), Positives = 40/56 (71%)
 Frame = +1

Query: 145 MGXANXWXSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICXQCFXXXAHXXGFKXLD 312
           MG    + SHPR +GQGSRSCR CSNRHGLIRKYGLN+C QCF   A   GF  LD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>BC032813-1|AAH32813.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 37/56 (66%), Positives = 40/56 (71%)
 Frame = +1

Query: 145 MGXANXWXSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICXQCFXXXAHXXGFKXLD 312
           MG    + SHPR +GQGSRSCR CSNRHGLIRKYGLN+C QCF   A   GF  LD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>AB061847-1|BAB79485.1|   56|Homo sapiens ribosomal protein S29
           protein.
          Length = 56

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 37/56 (66%), Positives = 40/56 (71%)
 Frame = +1

Query: 145 MGXANXWXSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICXQCFXXXAHXXGFKXLD 312
           MG    + SHPR +GQGSRSCR CSNRHGLIRKYGLN+C QCF   A   GF  LD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>AB007165-1|BAA25827.1|   26|Homo sapiens ribosomal protein S29
           protein.
          Length = 26

 Score = 38.7 bits (86), Expect = 0.027
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +1

Query: 229 GLIRKYGLNICXQCFXXXAHXXGF 300
           GLIRKYGLN+C QCF   A   GF
Sbjct: 1   GLIRKYGLNMCRQCFRQYAKDIGF 24


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,019,495
Number of Sequences: 237096
Number of extensions: 1081506
Number of successful extensions: 8849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6823
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)