Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B19
         (869 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    83   2e-16
U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    29   3.3  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 34/56 (60%), Positives = 39/56 (69%)
 Frame = +1

Query: 145 MGXANXWXSHPRXYGQGSRSCRSCSNRHGLIRKYGLNICXQCFXXXAHXXGFKXLD 312
           MG  N W SHPR +G GSRSCR C+  HGLIRKYGL++C +CF   A   GFK LD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 505 FXXAPXPPPKXXXPPPXPP 449
           +  AP PPP    PPP PP
Sbjct: 130 YIEAPPPPPSPPPPPPPPP 148


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 505 FXXAPXPPPKXXXPPPXPP 449
           F   P PPP    PPP PP
Sbjct: 780 FFALPVPPPPPVPPPPPPP 798


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,658,992
Number of Sequences: 27780
Number of extensions: 133043
Number of successful extensions: 1033
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)