Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B18
         (946 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.19 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.37 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.76 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = -1

Query: 454 PXXXKXKXXPXRGXXXXXPPPPGGPXXKKXPXPXPQKKXXPPXXGXGGAPPT 299
           P   +    P  G     P P   P   +   P P     PP  G  GAPP+
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSP-PNPSQGPPPGGPPGAPPS 57



 Score = 27.1 bits (57), Expect = 0.25
 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
 Frame = -1

Query: 691 PXXGGGGXRDXPPXGPXPX--GGXPXP---PPPGGXXXPPPPPPP 572
           P  G  G +  P   P     G  P P   PPPGG    PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 27.1 bits (57), Expect = 0.25
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -1

Query: 721 PPPXPXXXXGPXXGGGGXRDXPPXGPXPXGGXPXPPP 611
           P P P     P     G    P  GP P GG P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP-PPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 613  PPGGXXXPPPPPP 575
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect(2) = 0.37
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 682  GGGGXRDXPPXGPXPXGGXPXPPPP 608
            G  G R        P  G P PPPP
Sbjct: 1838 GSVGRRSVGSARNIPVSGSPEPPPP 1862



 Score = 21.0 bits (42), Expect(2) = 0.37
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 589  PPPPPP 572
            PPPPPP
Sbjct: 1859 PPPPPP 1864


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 592  PPPPPPPXXG 563
            PPPPPPP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 592  PPPPPPP 572
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 634 GGXPXPPPPGGXXXPPPPPPPXXGXP 557
           G    PP P      PPPPPP    P
Sbjct: 333 GDSDTPPKPA-----PPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.153    0.549 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,409
Number of Sequences: 438
Number of extensions: 10839
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)