Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B16
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    31   0.22 
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    30   0.50 
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    29   0.88 
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    28   1.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    28   2.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    28   2.0  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.2  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   6.2  

>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 28/85 (32%), Positives = 36/85 (42%)
 Frame = -3

Query: 609 RQVVYMSQGSRHVGVLVHVVLAIAQHFLHQVGQVDNFSIVANNF*ATEDQTGEVFNVLRL 430
           R VV        V +L+ VVL      L     V N   +   F + E  TGEV   L  
Sbjct: 287 RNVVKEESADMFVPILIFVVLQARPAHL-----VSNIQYI-QRFRSPEKLTGEVMYYLST 340

Query: 429 LQAYNSAVTTLDLSSKDTLSDHHFN 355
           L    S + TLD SS  T+++  FN
Sbjct: 341 LMGAMSFIETLDCSSL-TITEEEFN 364


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 511 LTNLMKKMLSYGQYNMDKYTYV 576
           LTN +K+++SY +YNM + TY+
Sbjct: 193 LTNYLKEVISYRKYNMMEETYI 214


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 548 NTTWTSTPTCRLPWDMYTTCLRDPVFWMIMXRV-CNIFTVFKNMLPKYTREQFSFP 712
           N+ +  TP  ++P D +    RDP++   M R+      VF+ +L K + E    P
Sbjct: 292 NSDYDVTPVLQMPLDTHPPTTRDPIYLGTMLRLFAEKIPVFQKILLKPSTESDLMP 347


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 508 HLTNLMKKMLSYGQYNMDKYTYVPTSLGHVHY 603
           HL  ++  ++   + N +K+++VP + GH  Y
Sbjct: 182 HLIKILTSLIEESKRNAEKFSHVPLNTGHWKY 213


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -1

Query: 293 RTGISSPLGRRILGQ*PVSRGSFHIIGLTSHILWLRRSSLILARSCWLAYIMIS 132
           RTG SSPLG+           SF ++ LT  +L L   S IL +   L Y  IS
Sbjct: 105 RTGTSSPLGQLFDHGVDAINTSFEVL-LTIELLQLDMFSSILTQFASLLYFYIS 157


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 133 EIMMYANQQLLARMRLERLSHKMCDVKPMMWNEP 234
           +I++YA +QL    R+ R ++ + D  P++W EP
Sbjct: 391 KILLYARRQLT---RMARWNNLIDDSSPLLWREP 421


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 553 NMDKYTYVPTSLGHVHYL--SPRSCLL 627
           N + + Y+P S+ H HYL  +P  C L
Sbjct: 711 NYELWRYIPYSIIHFHYLYATPEKCRL 737


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 683 KYTREQFSFPGVQVEKITTDELVTFVDEYDMDIXNAMYLD 802
           KY       P V ++   TDE+ +F+     D+ NA+ +D
Sbjct: 76  KYVASVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVD 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,805
Number of Sequences: 5004
Number of extensions: 62095
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)