Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_B16
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0482 + 8798931-8799024,8799118-8799253,8799435-8799506,879... 31 0.93
08_01_0147 - 1166439-1166460,1166525-1167537 30 2.8
05_03_0317 - 12249228-12249275,12263876-12264518,12264954-122666... 30 2.8
10_08_0050 + 14469879-14470072,14470620-14471094 29 3.8
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 29 6.6
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 28 8.7
03_04_0117 + 17411064-17411955,17412111-17413543 28 8.7
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595... 28 8.7
>03_02_0482 +
8798931-8799024,8799118-8799253,8799435-8799506,
8799583-8799654,8799798-8799869,8800133-8800204,
8800530-8800627,8800892-8801062,8801141-8801473,
8802494-8802739,8802884-8803017,8803132-8803344
Length = 570
Score = 31.5 bits (68), Expect = 0.93
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 KIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIREGILT-GKIERRDGTVISLKK 432
++ L G + + ++ +TK+ LK + MDD ++ G T K+ DG V +LK+
Sbjct: 257 RVELCGGSSIVMFHGDLPYSTKEILKKLETMDDENIIGVGGFGTVYKLAMDDGNVFALKR 316
Query: 433 -SEDIENLARLVLGGLEIVGDDAKVIHLTNL 522
+ E L + LEI+G K +L NL
Sbjct: 317 IMKTNEGLGQFFDRELEILG-SVKHRYLVNL 346
>08_01_0147 - 1166439-1166460,1166525-1167537
Length = 344
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 466 LGGLEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTYVPTSLGHVHYLSPRSCLLDDHXTS 645
LGG+ + L +L+Y Y+ + Y V T HYL P+ ++ S
Sbjct: 186 LGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHES 245
Query: 646 LQHL 657
L+H+
Sbjct: 246 LKHI 249
>05_03_0317 -
12249228-12249275,12263876-12264518,12264954-12266682,
12283603-12283975,12284119-12284715
Length = 1129
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 466 LGGLEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTYVPTSLGHVHYLSPRSCLLDDHXTS 645
LGG+ + L +L+Y Y+ + Y V T HYL P+ ++ S
Sbjct: 692 LGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHES 751
Query: 646 LQHL 657
L+H+
Sbjct: 752 LKHI 755
>10_08_0050 + 14469879-14470072,14470620-14471094
Length = 222
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 670 LENGEDVANSXHDHPE-DRIAETGSVHVPRKSARRCTCPCCIG 545
LEN +S D E + + E G + +P RRC+C CC G
Sbjct: 138 LENAGPAHSSGRDGGEVEGLIEMGRLRLP---PRRCSCCCCFG 177
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +1
Query: 253 PKIRLPSGDEMPVRQNNMVVATKDNLKMKQMMDDVEMMIREGILTGKIERRDGTVISLKK 432
P++ S +++P ++V+ K+ ++ + IRE I+ G+I +R G + L++
Sbjct: 1029 PQVEYVSIEDIP---ESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVLALLEQ 1085
Query: 433 ---SEDIENLARLVLGGLEIVGDDAKVIHLT 516
+D + + LV + +G++ KV T
Sbjct: 1086 PFIKDDSKTVKDLVKETIATLGENIKVRRFT 1116
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 28.3 bits (60), Expect = 8.7
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Frame = +1
Query: 325 NLKMKQMMDDVEMMIREGILTGKIERRDGTVISLKKSEDIENLARLVLGGLEIVGDDAKV 504
+L+M + + I LTGK+ V SL+ +++RL L ++ D V
Sbjct: 1438 SLEMLSSLVSPPIFITSFSLTGKLGSLPPWVASLR------SVSRLTLRRSQLRADAIHV 1491
Query: 505 IH-LTNLMKKMLSYGQYNMDKYTYVPTSLGHVHYLSPRSCLLDDHXTSLQHLHRFQEHAP 681
+ L NL+ L + Y D+ + V L+DD+ +L+ LH + P
Sbjct: 1492 LGGLQNLLCLKLYHKSYADDRLVFPQGGFARV------KLLIDDNLVNLEKLHFNEGSMP 1545
Query: 682 EIYSRTVQLPRSP 720
+ T+ R P
Sbjct: 1546 NLERLTLSFLREP 1558
>03_04_0117 + 17411064-17411955,17412111-17413543
Length = 774
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +1
Query: 361 MMIREGILTGKIERRDGTVISLKKSEDIENLARLVLGGLEIVGDDAKVIHLTNLMKKMLS 540
+++R +L G +E + SL +NL +L LGG ++ DD +++ + +
Sbjct: 708 LLLRSLLLYGSLEALPSWMASL------DNLVKLTLGGTKLEEDDIQILQKLPRLFSLRL 761
Query: 541 YGQYNMDKYTYVP 579
+ + ++K+ P
Sbjct: 762 WFAFAVEKFVVAP 774
>03_02_0640 -
10058828-10058971,10059066-10059201,10059512-10059590,
10060861-10060927,10061014-10061100,10061474-10061567,
10061663-10061749,10062267-10062328,10062485-10062584,
10062729-10062827,10062969-10063033,10063617-10063694,
10063787-10063873,10064383-10064466,10064860-10064955,
10065045-10065122,10066049-10066139,10066224-10066315,
10066433-10066560,10067421-10067495,10067670-10067850
Length = 669
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +1
Query: 106 YGINKERRGEIMMYANQQLLARMRLERLSHKMCDVKPMMWNEPLETGYWPKIRLPSGDEM 285
+ + +E GE+ + QL+ + S K+ P++W + ++ Y P + + +E
Sbjct: 245 FSLEQECGGEVQILKEPQLILLRQNSWQSMKVRGSIPLLWEQIVDLSYKPCLNIIEHEET 304
Query: 286 P 288
P
Sbjct: 305 P 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,447,702
Number of Sequences: 37544
Number of extensions: 455835
Number of successful extensions: 1157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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