Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B14
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    28   1.9  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    28   1.9  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   4.4  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   4.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.7  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.7  

>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = -2

Query: 309 TEF--DEVPSSSGCCFKEA*NTKFCTGLEVK-YEEKHLSPRRHSGGMNISANVHIV---L 148
           TEF  DEVP+S+G   K       C  + +  +  +H S    +G   I  N+ +V    
Sbjct: 75  TEFKQDEVPNSNG---KSIPTFHPCNNIGINDFNHQHYSRVCRNG---IDINLIVVGESS 128

Query: 147 ITYTTNINVRIKDTDTNFIPKREL 76
           +  TT +N  ++  DTNF PK+ +
Sbjct: 129 LGKTTFVNSFLQSNDTNFRPKKTM 152


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 688 KDSGRQFLPIIQHXVLXSRMSHLLLLNNSMTKVQCDCKCVSSIIWYIST 834
           ++S   F+PI+   VL +R +HL+     + + +   K    +++Y+ST
Sbjct: 292 EESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLST 340


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 683 RDIILQVFWKMVSSNHQLIPTRVQLWIYEHKDGDV 579
           +D  + V +   SS   LI  +VQ WI E   GDV
Sbjct: 484 KDSSVVVIFDENSSKRFLIEDKVQSWIIEDSSGDV 518


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 TMEHYICMLSCWMIAN 443
           T+ H +C L+CW+I N
Sbjct: 209 TLAHEVCHLACWIIDN 224


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 657  EDGKFKSSINTDKGTTVDI 601
            +DGK+KS  N  K  TVD+
Sbjct: 1204 DDGKYKSGTNLRKSETVDL 1222


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
 Frame = +2

Query: 263 SLKQQPLEEGTSSNSVTKVHTLLNFDYRNPASINVQLNIPRKTRNNGTLYMHVVMLDDSK 442
           SL++Q L +   S   TK+  +L      P S + +L  P    N+ T       LDD++
Sbjct: 93  SLERQRLVQHFESK--TKLQEILK-----PLSSDPKLKQPSNCLNDQTNNDSAQTLDDNR 145

Query: 443 LYKSFDE--IRQTHPLHTWPLIKFVEPQAATFNLLQHNDKEKNSGEDRHL 586
             + FDE  ++ T+ ++   L    + +   F L  +ND+E +  + R L
Sbjct: 146 ALQEFDEQVVQLTNRMYKEQLAILADLKIPLF-LSVNNDEELSEDQKRLL 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,609,519
Number of Sequences: 5004
Number of extensions: 78720
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)