Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B13
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   172   6e-44
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   171   8e-44
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   4.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   7.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  172 bits (418), Expect = 6e-44
 Identities = 80/156 (51%), Positives = 105/156 (67%)
 Frame = +3

Query: 96  SLKLQXRLAASVMRCGKKXVWLXPNXINXXANTNSXQXIRKXXKXGLVIKKPVAVHSRAR 275
           +L+ Q RLAASV++CGK+ VW+ PN I+  +N NS Q IRK  K GLVI+KP  +HSR R
Sbjct: 3   NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFR 62

Query: 276 VRKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 455
           +RK   A+R GRH G+GK  GTA ARMP   +W                + KID+HLYH+
Sbjct: 63  IRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122

Query: 456 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 563
           LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  171 bits (417), Expect = 8e-44
 Identities = 79/156 (50%), Positives = 105/156 (67%)
 Frame = +3

Query: 96  SLKLQXRLAASVMRCGKKXVWLXPNXINXXANTNSXQXIRKXXKXGLVIKKPVAVHSRAR 275
           +L+ Q RLAASV++CGK+ VW+ PN I+  +N NS Q +RK  K GLVI+KP  +HSR R
Sbjct: 3   NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFR 62

Query: 276 VRKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 455
           +RK   A+R GRH G+GK  GTA ARMP   +W                + KID+HLYH+
Sbjct: 63  IRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122

Query: 456 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 563
           LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -1

Query: 638 FLLLGGNT-----FLAALACLLYFIAAGL 567
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 529 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 437
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,972
Number of Sequences: 5004
Number of extensions: 41742
Number of successful extensions: 216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)