Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B13
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   190   9e-49
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   189   2e-48
07_03_1639 + 28305801-28305958,28306240-28306249                       33   0.29 
03_02_0050 + 5272471-5274861                                           30   2.0  
04_04_1687 - 35365766-35366356,35367137-35368135                       29   6.2  

>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  190 bits (464), Expect = 9e-49
 Identities = 90/156 (57%), Positives = 107/156 (68%)
 Frame = +3

Query: 96  SLKLQXRLAASVMRCGKKXVWLXPNXINXXANTNSXQXIRKXXKXGLVIKKPVAVHSRAR 275
           SLKLQ RLAASV++CGK  VWL PN +N  +  NS Q IRK  K G +IKKP  +HSR+R
Sbjct: 3   SLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62

Query: 276 VRKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 455
            R+  EA++KGRH G+GK  GT  AR+P K LW                AKKID+H+YH 
Sbjct: 63  ARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHD 122

Query: 456 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 563
           +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  189 bits (461), Expect = 2e-48
 Identities = 89/156 (57%), Positives = 107/156 (68%)
 Frame = +3

Query: 96  SLKLQXRLAASVMRCGKKXVWLXPNXINXXANTNSXQXIRKXXKXGLVIKKPVAVHSRAR 275
           SLKLQ RLA+SV++CGK  VWL PN +N  +  NS Q IRK  K G +IKKP  +HSR+R
Sbjct: 3   SLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62

Query: 276 VRKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 455
            R+  EA++KGRH G+GK  GT  AR+P K LW                AKKID+H+YH 
Sbjct: 63  ARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHD 122

Query: 456 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 563
           +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +3

Query: 462 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 563
           MK KGN+  NKR       + +AEKAR + LSDQ
Sbjct: 1   MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 635 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 477
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L H+
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 239 HQETCSSPLPRPCPQKHR 292
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,559
Number of Sequences: 37544
Number of extensions: 327683
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)