Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B13
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   183   1e-46
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    28   7.3  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  183 bits (446), Expect = 1e-46
 Identities = 84/156 (53%), Positives = 107/156 (68%)
 Frame = +3

Query: 96  SLKLQXRLAASVMRCGKKXVWLXPNXINXXANTNSXQXIRKXXKXGLVIKKPVAVHSRAR 275
           +L+LQ RLA++V++CGK  VWL PN ++  +  NS Q IR+    GL+I+KPV VHSR R
Sbjct: 3   NLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFR 62

Query: 276 VRKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 455
            R+  EARRKGRH G+GK  GTANARMP+K LW                AKK+D+HLYH 
Sbjct: 63  AREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHE 122

Query: 456 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 563
           LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 123 LYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 589 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 684
           RRHAS     +PP   NC +P+ ++T+  + L
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSL 45


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 636 PPSWRQYVPRGACVPPL 586
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 426 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYXFXYQSHSD-DPFYVPLCFCGHGR 268
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 610 RNVLPPRRRNCCRPSLEKTKPRLP 681
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,923
Number of Sequences: 27780
Number of extensions: 253590
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)