Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B12
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    29   4.4  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    29   4.4  
L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    29   5.8  
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 713 CLRVSVWNTLSRDFTIPGGHLINFCAFFNQGSSYWRIPQWGSSVSNLKSMS 561
           CL +   N L+ DF  PG   +++      G+  ++I +WG+  + ++S++
Sbjct: 327 CLEIDEMNELAPDFDYPGMPTVDYLRLRMPGAGVYKI-KWGNEQAWIRSLT 376


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 431 TSMMPKTVPINSSTLCATRXGDRIALFI--AEGGPECFQQKTENLKTCFLNL 580
           TS      P+NS+  C  R  DR        + G +CF   T N  TC+  L
Sbjct: 296 TSTQVCASPLNSTQTCIPRLPDRRYCIDEPCQVGMKCFDNVTSNAYTCYTKL 347


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 431 TSMMPKTVPINSSTLCATRXGDRIALFI--AEGGPECFQQKTENLKTCFLNL 580
           TS      P+NS+  C  R  DR        + G +CF   T N  TC+  L
Sbjct: 296 TSTQVCASPLNSTQTCIPRLPDRRYCIDEPCQVGMKCFDNVTSNAYTCYTKL 347


>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 128 AAGVLADDFSQITAVVTSQCTKNNAEDKVP 217
           AAG+    +SQI A V  QCTK  A  K P
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP 35


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 128 AAGVLADDFSQITAVVTSQCTKNNAEDKVP 217
           AAG+    +SQI A V  QCTK  A  K P
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,738,885
Number of Sequences: 27780
Number of extensions: 413126
Number of successful extensions: 1182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)