Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B12
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 513 MNKAIRSPXLVAHKVDEL 460
           +NK  ++P LVAH+ ++L
Sbjct: 573 LNKIGKNPNLVAHREEDL 590


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 513 MNKAIRSPXLVAHKVDEL 460
           +NK  ++P LVAH+ ++L
Sbjct: 541 LNKIGKNPNLVAHREEDL 558


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 670 VKSLERVFHTDTRKHGGITDQVH 738
           +K LER++  DT  + G    VH
Sbjct: 111 IKMLERIWRPDTYFYNGKHSYVH 133


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 852 KKLSKVINFVMALVLT 805
           K+LSK INF  +L L+
Sbjct: 468 KELSKTINFTYSLALS 483


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 145 SQHTGSENRYQDSLPHHCNKET 80
           SQ     N+ +    HHCN++T
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDT 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,872
Number of Sequences: 438
Number of extensions: 4643
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)