Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B10
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    74   2e-13
L15314-2|AAF99983.1|  322|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    28   7.6  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
 Frame = +3

Query: 435 CTNSVVEADDLP-KTEVQVMWKAPPAGSGCVLLKAMVYENASRWFAEDGQLTKRIC--ED 605
           C  S V   +L  KT V +MWKAP   SGCV+ +A V E    WF E   LT ++C  + 
Sbjct: 118 CRQSGVSHANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKLCIQKG 177

Query: 606 TSLSIP------DCCACDDAKYXMVFEGLWSPXTH 692
           T +  P       CCACD A+Y + F G+WS  TH
Sbjct: 178 TQILKPVDDPSATCCACDIAQYDLEFTGIWSKNTH 212



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
 Frame = +2

Query: 116 AILRILVWLGLVSAALA----CELNPGPGVGSKSPGDNHYRLIVNGEVER-------YAP 262
           AIL+ ++ L L+ +  A    C + P    G KSPG N Y + +NG   +       + P
Sbjct: 6   AILQFILLLLLIFSCNADEAKCTIKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVP 65

Query: 263 DQRYVVTLVGSRTHDVVQQFAGFKIILDPLNPDTRRAPSKQ 385
            + Y V++ G RT   V+ F GF  ++  L  D   A S Q
Sbjct: 66  GEIYKVSIRGWRTQYTVKTFRGF--VVSSLFEDNTSAGSWQ 104


>L15314-2|AAF99983.1|  322|Caenorhabditis elegans Hypothetical
           protein K06H7.7 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 263 PAHIAQLLR*QSACSDC----LQVTLNLLQDLDLARRPVP 156
           P H  ++L+   +C DC    L V + L   LDL+  P+P
Sbjct: 170 PGHFVEMLKEDCSCRDCGSADLAVKVRLTVPLDLSDIPIP 209


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 323 QTVVLRHECGNRPESRHISDPAHIAQLLR*QSACSD 216
           + + L HECG R +S H++  AH    LR     +D
Sbjct: 448 RAIYLLHECGQRVDSVHVAVLAHKLGYLRMSKKSTD 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,911
Number of Sequences: 27780
Number of extensions: 365801
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)