Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B09
         (1072 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         29   8.3  
07_03_1107 - 24024387-24024497,24025799-24026410                       29   8.3  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 32/170 (18%), Positives = 41/170 (24%), Gaps = 2/170 (1%)
 Frame = +1

Query: 559  PKXDXTXQXAPAXXXHXGXXPXKPXXXXRSXXQXTEPXGKXXPKNXAXGXPPPXTRTPPX 738
            P+   +    PA   H    P       +S            P       P P   TPP 
Sbjct: 621  PESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPT 680

Query: 739  XHPPXXXXRNXAXXXNXXXTGRXPGRXADPPXQTPP-XXXXXXXXXXXXXXXXXXXXXHX 915
               P       +        G  P     PP  TPP                      H 
Sbjct: 681  EKSPPTPESESSSPPPPAPEGHMP----SPPKSTPPVEKSPPTPESEASSPPPPAPEGHT 736

Query: 916  TXPXXAXPXRXPTXXXPXAPXRXXGPXXP-NXXPAXPXXTXTREQXTPXH 1062
              P  + P    +   P  P     P  P    P+ P  +   E+  P H
Sbjct: 737  PSPPKSSPPEEKS--PPIPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPPH 784


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 804 TPRXXRXPPXXDPTXPXARAPXSAXTTP 887
           TP     PP   PT P   AP  A TTP
Sbjct: 54  TPPAASTPPAAAPTTPATPAPAEAPTTP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,278
Number of Sequences: 37544
Number of extensions: 167557
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3187874508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)