Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_B06
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 36 0.039
Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 33 0.21
U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 4.5
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 4.5
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 29 5.9
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 29 5.9
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 130 LCWLWPTLKETATNLLTTARTSLILPKTTT---LMETATNLSTTVHITWTVPKADLTSSL 300
LC+LW L T T TT T+ + TTT + T T T T TVP T+++
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTV 238
Query: 301 P 303
P
Sbjct: 239 P 239
>Z75542-6|CAA99864.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 142 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 300
WP ET TT T+ +P TTT+ T T +T T T A T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>Z75538-3|CAA99842.3| 552|Caenorhabditis elegans Hypothetical
protein F55D12.5 protein.
Length = 552
Score = 35.1 bits (77), Expect = 0.068
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 142 WPTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSL 300
WP ET TT T+ +P TTT+ T T +T T T A T+++
Sbjct: 298 WPLPAETVPAPKTTTTTTTTVPSTTTITTTTTQRTTPYTTTTTTTAAPTTTTM 350
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 33.5 bits (73), Expect = 0.21
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +1
Query: 145 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 294
PT + T T TT T+ P TTT ET T +TT T T P T+
Sbjct: 112 PTTETTTTPTTTTPTTTTTTPTTTTT-ETTTTPTTTTTETTTTPTTTTTT 160
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 148 TLKETATNLLTTARTSLILPKTTTLMETATNLS-TTVHITWTVPKADLTSS 297
T T T TT T+ P TTT T T + TT T T P + T++
Sbjct: 69 TTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTT 119
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 148 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHI-TWTVPKADLTSSLPLS 309
T T T TT T+ +P TTT T T +TT T T P T + S
Sbjct: 198 TTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTS 252
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 145 PTLKETA-TNLLTTARTSLILPKTTTLM-ETATNLSTTVHITWTVPKADLTS 294
PT TA T TT T+ P TTT + T T TT T T P T+
Sbjct: 189 PTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTT 240
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +1
Query: 148 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 294
T T T TT T+ P TTT T TT T T P T+
Sbjct: 83 TTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTT 131
>U21319-7|AAL16307.1| 469|Caenorhabditis elegans Hypothetical
protein C30G12.1 protein.
Length = 469
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 145 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 309
P K+ N+ TT I TTT M T T ST + T T P+ ++P S
Sbjct: 275 PEKKKEVFNVFTTKTNPQI---TTTTMTTTTRTSTAIPTTTTTPRQISLQTIPFS 326
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 148 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 276
T T T TT+ T+ P TTT T STT T T P
Sbjct: 60 TTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTP 102
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 148 TLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS-SLPLSLV 315
T T T TT T+ P TTT T T +TT T T P T+ S PL+ V
Sbjct: 90 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTT--TTTPTTTTTTPTTTTTTRSTPLTEV 144
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 160 TATNLLTTARTSLILPKTTTLMETATNLSTTVHIT--WTVPKADLTSSLP 303
T T TT T+ P TTT T T +TT+ T T P T++ P
Sbjct: 304 TETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKP 353
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 160 TATNLLTTARTSLILPKTTTLMETATNL-STTVHITWTVPKADLTSS 297
T T TT TS P TTT T T STT T T+ T++
Sbjct: 297 TTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTTT 343
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 154 KETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSLVLAVGSK 333
KET T+L T PKTTT++ ++T ST +T +A T++ P + V +K
Sbjct: 442 KETTTSLATEQ------PKTTTIVASSTETST---VTTDATEATTTTTAPTTTVATTTTK 492
Query: 334 E 336
+
Sbjct: 493 K 493
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 145 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 294
P+ T T + +T+ T TTTL + + STT T TV + TS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 145 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTS 294
P+ T T + +T+ T TTTL + + STT T TV + TS
Sbjct: 407 PSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPSTSTVTTSPSTS 456
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 145 PTLKETATNLLTTARTSLILPKTTTLMET--ATNLSTTVHITWTVPKADLTSSLPLSLVL 318
PT+ T T ++TT T + +P T + T TN ST V TV T S V+
Sbjct: 361 PTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTAPSTVVTVPTTVMTSRSTVI 420
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 654 IAFILCFRFRGRCGXVFSALM 716
I FI+C F G G +FS LM
Sbjct: 225 IPFIICMEFMGNSGRIFSGLM 245
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 654 IAFILCFRFRGRCGXVFSALM 716
I FI+C F G G +FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 654 IAFILCFRFRGRCGXVFSALM 716
I FI+C F G G +FS LM
Sbjct: 208 IPFIICMEFMGNSGRIFSGLM 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,214
Number of Sequences: 27780
Number of extensions: 299900
Number of successful extensions: 865
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -