Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B02
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   143   3e-35
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   143   3e-35
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  143 bits (346), Expect = 3e-35
 Identities = 69/143 (48%), Positives = 87/143 (60%)
 Frame = +1

Query: 229 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 408
           Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AA
Sbjct: 39  QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98

Query: 409 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYXDVXLXRTTTGAR 588
           Y+TG                              E +++GP  F  + DV L RT+TG+R
Sbjct: 99  YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158

Query: 589 VFGAMXGAVDGGLNVPHSIXRFP 657
           VFGAM GA DGGL +PHS  RFP
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFP 181



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +3

Query: 120 FVKVVXXXQXFKXYQVKFKXRREGKTDYYARKRLXCSGQEQ 242
           F+K V     F  YQ K++ RREGKTDYYARKRL    + +
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  143 bits (346), Expect = 3e-35
 Identities = 69/143 (48%), Positives = 87/143 (60%)
 Frame = +1

Query: 229 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 408
           Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ AA
Sbjct: 39  QAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAA 98

Query: 409 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYXDVXLXRTTTGAR 588
           Y+TG                              E +++GP  F  + DV L RT+TG+R
Sbjct: 99  YATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSR 158

Query: 589 VFGAMXGAVDGGLNVPHSIXRFP 657
           VFGAM GA DGGL +PHS  RFP
Sbjct: 159 VFGAMKGASDGGLFIPHSPNRFP 181



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +3

Query: 120 FVKVVXXXQXFKXYQVKFKXRREGKTDYYARKRLXCSGQEQ 242
           F+K V     F  YQ K++ RREGKTDYYARKRL    + +
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 445 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 353
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,929
Number of Sequences: 5004
Number of extensions: 38174
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)