Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_B02
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   146   2e-35
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   146   2e-35

>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  146 bits (354), Expect = 2e-35
 Identities = 74/142 (52%), Positives = 88/142 (61%)
 Frame = +1

Query: 229 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 408
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 409 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYXDVXLXRTTTGAR 588
           Y TG                          +Y VEP D     F    DV L RTTTG R
Sbjct: 97  YCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNR 155

Query: 589 VFGAMXGAVDGGLNVPHSIXRF 654
           VFGA+ GA+DGGL++PHS  RF
Sbjct: 156 VFGALKGALDGGLDIPHSDKRF 177



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/35 (60%), Positives = 23/35 (65%)
 Frame = +3

Query: 117 GFVKVVXXXQXFKXYQVKFKXRREGKTDYYARKRL 221
           GFVK        K +QVKFK RR+GKTDY AR RL
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37


>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  146 bits (354), Expect = 2e-35
 Identities = 74/142 (52%), Positives = 88/142 (61%)
 Frame = +1

Query: 229 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 408
           QDKNKYNTPKYR +   +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAA
Sbjct: 40  QDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAA 96

Query: 409 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYXDVXLXRTTTGAR 588
           Y TG                          +Y VEP D     F    DV L RTTTG R
Sbjct: 97  YCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNR 155

Query: 589 VFGAMXGAVDGGLNVPHSIXRF 654
           VFGA+ GA+DGGL++PHS  RF
Sbjct: 156 VFGALKGALDGGLDIPHSDKRF 177



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 22/35 (62%), Positives = 24/35 (68%)
 Frame = +3

Query: 117 GFVKVVXXXQXFKXYQVKFKXRREGKTDYYARKRL 221
           GFVK       FK +QVKFK RR+GKTDY AR RL
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRL 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,261
Number of Sequences: 37544
Number of extensions: 251573
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)