Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A19
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    42   1e-04
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   2.5  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 28/74 (37%)
 Frame = +1

Query: 193 LXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXXPTSLEXX 372
           L V G     V FK K       L   YC   G SM  +RF  DG  I     P  L+  
Sbjct: 38  LKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDME 97

Query: 373 XGXXIXVYQQQXGG 414
            G  I    +Q GG
Sbjct: 98  DGDQIEAVLEQLGG 111


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -3

Query: 713 QSGLRRRVN*TYHNGIVEXTYSIWYTYNVPYHKXFETHNALRSSAMLLCVTKLXPNTFTD 534
           Q+ + + V   + N   + T +  + Y +   K FET N      M+  V    P T TD
Sbjct: 2   QTAMNKYVETAFQNQ--KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTD 59

Query: 533 TNXVSLKLT*G*SLRRVHL 477
              ++ KL  G    RVHL
Sbjct: 60  LEPLANKLE-GPLSERVHL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,088
Number of Sequences: 5004
Number of extensions: 24316
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)