Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A19
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782     46   3e-05
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532     46   4e-05
01_06_1364 + 36684937-36685281                                         28   7.9  

>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
          Length = 101

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 26/81 (32%), Positives = 33/81 (40%)
 Frame = +1

Query: 172 GAXAXXXLXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXX 351
           G  A   L V G     V F+ K    L+ L  AYC    + ++ + F FDG  +N    
Sbjct: 17  GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFDGRRLNAEQT 76

Query: 352 PTSLEXXXGXXIXVYQQQXGG 414
           P  LE   G  I     Q GG
Sbjct: 77  PDQLEMEDGDEIDAMLHQTGG 97


>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
          Length = 100

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 26/81 (32%), Positives = 31/81 (38%)
 Frame = +1

Query: 172 GAXAXXXLXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXX 351
           G  A   L V G     V F+ K    L+ L  AYC    + M  + F FDG  +     
Sbjct: 16  GGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQT 75

Query: 352 PTSLEXXXGXXIXVYQQQXGG 414
           P  LE   G  I     Q GG
Sbjct: 76  PDELEMEDGDEIDAMLHQTGG 96


>01_06_1364 + 36684937-36685281
          Length = 114

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
 Frame = +1

Query: 145 NLKXAXAXXGAX-AXXXLXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRF-X 318
           +LK   A  G       + V     A V F  K    LR +   YC    L  + V+F  
Sbjct: 17  DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76

Query: 319 FDGXPINXXXXPTSLEXXXGXXIXVYQQQXGGVSL 423
            DG  +     P  +    G  I +   Q GG  +
Sbjct: 77  DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,358
Number of Sequences: 37544
Number of extensions: 146353
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)