Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A19
         (832 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061090-1|AAL28638.1|   90|Drosophila melanogaster LD07775p pro...    86   6e-17
AF218862-1|AAF31702.1|   90|Drosophila melanogaster Smt3 protein.      86   6e-17
AF053083-1|AAD19219.1|   90|Drosophila melanogaster ubiquitin-li...    86   6e-17
AE014134-1209|AAF52470.1|   90|Drosophila melanogaster CG4494-PA...    86   6e-17

>AY061090-1|AAL28638.1|   90|Drosophila melanogaster LD07775p
           protein.
          Length = 90

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 45/74 (60%), Positives = 45/74 (60%)
 Frame = +1

Query: 193 LXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXXPTSLEXX 372
           L V G   A V FK K   PLR L  AYC  AGLSMQVVRF FDG PIN    PTSLE  
Sbjct: 15  LKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEME 74

Query: 373 XGXXIXVYQQQXGG 414
            G  I VYQQQ GG
Sbjct: 75  EGDTIEVYQQQTGG 88


>AF218862-1|AAF31702.1|   90|Drosophila melanogaster Smt3 protein.
          Length = 90

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 45/74 (60%), Positives = 45/74 (60%)
 Frame = +1

Query: 193 LXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXXPTSLEXX 372
           L V G   A V FK K   PLR L  AYC  AGLSMQVVRF FDG PIN    PTSLE  
Sbjct: 15  LKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEME 74

Query: 373 XGXXIXVYQQQXGG 414
            G  I VYQQQ GG
Sbjct: 75  EGDTIEVYQQQTGG 88


>AF053083-1|AAD19219.1|   90|Drosophila melanogaster ubiquitin-like
           protein SMT3 protein.
          Length = 90

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 45/74 (60%), Positives = 45/74 (60%)
 Frame = +1

Query: 193 LXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXXPTSLEXX 372
           L V G   A V FK K   PLR L  AYC  AGLSMQVVRF FDG PIN    PTSLE  
Sbjct: 15  LKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEME 74

Query: 373 XGXXIXVYQQQXGG 414
            G  I VYQQQ GG
Sbjct: 75  EGDTIEVYQQQTGG 88


>AE014134-1209|AAF52470.1|   90|Drosophila melanogaster CG4494-PA
           protein.
          Length = 90

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 45/74 (60%), Positives = 45/74 (60%)
 Frame = +1

Query: 193 LXVXGXAXAXVXFKXKXXXPLRXLXXAYCXXAGLSMQVVRFXFDGXPINXXXXPTSLEXX 372
           L V G   A V FK K   PLR L  AYC  AGLSMQVVRF FDG PIN    PTSLE  
Sbjct: 15  LKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEME 74

Query: 373 XGXXIXVYQQQXGG 414
            G  I VYQQQ GG
Sbjct: 75  EGDTIEVYQQQTGG 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,678
Number of Sequences: 53049
Number of extensions: 260725
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)