Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A17
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.32 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   0.99 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   9.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   9.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 191  PPPPPPPP 168
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 529 PPPPRGQEXXXXRPGGPRPXXXEAPXPXPP 618
           PP PR +      PG  RP     P P  P
Sbjct: 111 PPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140



 Score = 25.0 bits (52), Expect = 0.99
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 529 PPPPRGQEXXXXRPGGPRPXXXEAPXPXPP 618
           PP PR +      PG  RP     P P  P
Sbjct: 137 PPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 206  PXXXXPPPPPPPP 168
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 191 PPPPPPPP 168
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 215 PPPPXXXXPPPPPPPPXXXP 156
           PP P     PPPPPP    P
Sbjct: 338 PPKPA----PPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 904 PXKPXPPPXP 933
           P KP PPP P
Sbjct: 338 PPKPAPPPPP 347


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 756 PXPAPXPTXTPXXPPPPXXP 815
           P P P P      PP P  P
Sbjct: 119 PVPVPVPVYCGNFPPRPMGP 138


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 756 PXPAPXPTXTPXXPPPPXXP 815
           P P P P      PP P  P
Sbjct: 123 PVPVPVPVYCGNFPPRPMGP 142


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 756 PXPAPXPTXTPXXPPPPXXP 815
           P P P P      PP P  P
Sbjct: 123 PVPVPVPVYCGNFPPRPMGP 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.151    0.533 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,705
Number of Sequences: 438
Number of extensions: 8792
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)