Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A16
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.17 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +3

Query: 537 VXIKTLXFXXXXXXXXXXXXEMRLLRELRHDNLNSFIGAVVEPMRVLILTDYCAQGSLYD 716
           V IKTL              E  ++ +  H N+    G V +   V+I+T++   GSL  
Sbjct: 664 VAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENGSLDT 723

Query: 717 IIXXXD 734
            +   D
Sbjct: 724 FLRAND 729


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 83  NEIDRNCSYSMIPVAHFQQNSKEFP 157
           N  + NCS   +P  + Q +++E+P
Sbjct: 680 NPFNCNCSMDWLPGINNQTSTREYP 704


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 424 YPVTSCASISQRKPSISCLIFHFRYLLTVTNNTQNKV 314
           + VTS   I    PS+ C++F+   +L V   T   V
Sbjct: 123 HSVTS-VGIDLEMPSVECIVFNSGTILCVPFTTYTPV 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,689
Number of Sequences: 438
Number of extensions: 4478
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)