Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A14
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.14 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.43 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPPXXXXXPPPPPXXXXPA 405
           PPP      G  P PP     PPPPP    P+
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
 Frame = +2

Query: 311 PPRXSXXXXXXAPPPXXXXXXPPPPP------XXXPPPGGGXXFFXFXXXXPPXXPXRGX 472
           PP  S        PP      PPPPP         PPP             PP  P R  
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400

Query: 473 XXXPP 487
              PP
Sbjct: 401 PALPP 405



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +1

Query: 373 PPPPPXXXXPAGXXGXXFXFXXXXXPPXPXXGXXXPPPPPXK 498
           PPPPP     AG              P P  G   PPPPP +
Sbjct: 338 PPPPPPRSNAAGSI------------PLPPQGRSAPPPPPPR 367


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +1

Query: 346 PPPPXXXXXPPPPPXXXXPAGXXGXXFXFXXXXXPPXPXXGXXXPPPPP 492
           PPPP      P P     P               PP    G   PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPPXXXXXPPPPPXXXXPAGXXGXXFXFXXXXXPPXP 459
           P P    P    PPP      PPPPP         G  +        P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/60 (35%), Positives = 21/60 (35%)
 Frame = +1

Query: 313 PPXFXXPXGXXPPPPXXXXXPPPPPXXXXPAGXXGXXFXFXXXXXPPXPXXGXXXPPPPP 492
           P     P    PP P     PPPPP    P G  G          PP P      PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP----PPGVAG--------AGPPPP------PPPPP 783



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
 Frame = +2

Query: 311 PPRXSXXXXXXAPPPXXXXXXPPPPPXXXPP--PGGGXXFF 427
           PP          PPP       PPPP   PP    GG  ++
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/79 (25%), Positives = 20/79 (25%)
 Frame = +2

Query: 311 PPRXSXXXXXXAPPPXXXXXXPPPPPXXXPPPGGGXXFFXFXXXXPPXXPXRGXXXXPPP 490
           PP          P P      PP P    PPP             PP  P       PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP-------------PPPPPGVAGAGPPPP 778

Query: 491 PXKKXIXXXGGGGXXTXPP 547
           P        GG       P
Sbjct: 779 PPPPPAVSAGGSRYYAPAP 797



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 312 PPXFPXPXXXXPPPPXXXXXXPPPP 386
           P   P P    PP P      PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 344  APPPXXXXXXPPPPPXXXPPP 406
            A PP      PPPPP   PPP
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPP 1717



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +2

Query: 344  APPPXXXXXXPPPPPXXXPPPGGGXXFFXFXXXXPPXXPXRGXXXXPPP 490
            APP       PPPP    PPP             PP  P       P P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 310  PPPXFXXPXGXXPPPPXXXXXPPPPP 387
            PPP    P    PP P      PPPP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 349  PPPXXXXXPPPPPXXXXPAG 408
            PPP     PPPP     PAG
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG 1726



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 314  PRXSXXXXXXAPPPXXXXXXPPPPPXXXPPPGG 412
            P+ +      AP P       PPPP   P P G
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPPXXXXXPPPPPXXXXPA 405
           PPP F  P    P         PPPP    PA
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPPA 198


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/68 (30%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPP---XXXXXPPPPPXXXXPAG--XXGXXFXFXXXXXPPXP---XX 465
           PPP    P    PPPP         PPPP    P                 PP P     
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268

Query: 466 GXXXPPPP 489
           G   PPPP
Sbjct: 269 GEHMPPPP 276



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/68 (30%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPP---XXXXXPPPPPXXXXPAG--XXGXXFXFXXXXXPPXP---XX 465
           PPP    P    PPPP         PPPP    P                 PP P     
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333

Query: 466 GXXXPPPP 489
           G   PPPP
Sbjct: 334 GEHMPPPP 341



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/69 (30%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPPXXXXXP----PPPPXXXXPAG--XXGXXFXFXXXXXPPXP---X 462
           PPP      G   PPP     P    PPPP    P                 PP P    
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE 319

Query: 463 XGXXXPPPP 489
            G   PPPP
Sbjct: 320 PGEHMPPPP 328


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 347 PPPXXXXXXPPPPPXXXPPPG 409
           PPP      PP  P   PPPG
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 310 PPPXFXXPXGXXPPPP 357
           PPP F  P    PPPP
Sbjct: 14  PPPGFEPPSQPPPPPP 29


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/61 (32%), Positives = 20/61 (32%)
 Frame = -2

Query: 491 GGGGGXXXPXXGXGGXXXXKXKKXXPXXPAGXXXXGGGGGXXXXXGGGGXXPXGXXKXGG 312
           G GGG   P  G GG               G    GGG G     GG G    G    GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG--FEGGPGGFGGGPGGFGG 249

Query: 311 G 309
           G
Sbjct: 250 G 250



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 27/85 (31%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
 Frame = -2

Query: 557 GGGXGXXXXXX--PPXXXXXFFXXGGGGGXXXPXXGXGGXXXXKXKKXXPXXPAGXXXXG 384
           GGG G        PP     F   GG GG      G GG          P    G    G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG------PGGFEGGPG-G 239

Query: 383 GGGGXXXXXGGGGXXPXGXXKXGGG 309
            GGG     GG G    G    GGG
Sbjct: 240 FGGGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,203
Number of Sequences: 5004
Number of extensions: 29197
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)