Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A09
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    33   0.071
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   1.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.7  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.7  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   8.1  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   8.1  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 394 LSPLH*RVLASNMGSIRNSWTVGSNIGQKNTHSLKGRS-SLTNILISRL--ISXGLNIHF 564
           L+PL  R   +++  I    T  SN+   N  SLK +S S++NIL ++L  IS   N   
Sbjct: 361 LTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSANNDVM 420

Query: 565 MRITPKVP 588
            R+ PK P
Sbjct: 421 ARLQPKSP 428


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 203 SAGVHTIVPPRSEXSTADASARPGGVVG 286
           SA   T++PPR+E +   AS +P G  G
Sbjct: 118 SANSSTVLPPRTENALHAASPKPSGSTG 145


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 453 DSWLKYWAEEYPFAERQKFLNQY 521
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 145 CVLISASXCHVFCLSSCRC 201
           CVL+    CH+ CLS  +C
Sbjct: 496 CVLLGEIRCHIGCLSCTKC 514


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 469 IGQKNTHSLKGRSSLTNILISRLIS 543
           IG KNT++L  R++ +N+L S L S
Sbjct: 795 IGLKNTNNLSERNASSNLLNSSLFS 819


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 844 LLGRSIAXNQVWPSGFENXCNFSSSEAGTYRR 749
           LL   ++ +QV+   FE  C FS S   +YR+
Sbjct: 329 LLSTHLSPSQVFYPMFEAACAFSQSPQASYRK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,645
Number of Sequences: 5004
Number of extensions: 59026
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)