Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A09
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    64   1e-10
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    41   0.001
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    30   2.5  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
 Frame = +3

Query: 300 KQKQD-TSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVG-FKYGFXSKQLDSWLKYW 473
           K K D T IKPF++   ++++ +LK R++  R     LE    F YGF SKQL     YW
Sbjct: 41  KAKPDNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDDFYYGFNSKQLLKLRDYW 100

Query: 474 AEEYPFAERQKFLNQYPHFKTNIQXFE-YSLH 566
             +Y + +++  +NQ+P FKT I+  + + LH
Sbjct: 101 LNKYDWRKQEATINQFPQFKTEIEGLQVHFLH 132



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 647 EFYEAIPHLTAVSQ---DRXFALEIIAPSLPGYGFSDAAVRPGLAAAEVAXIFK 799
           EFY+ IP LT   +   D  FA E+IAPS+PGYG+SD   + G +    A +F+
Sbjct: 157 EFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSDQPKKTGFSQLACARVFR 210



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +1

Query: 547 GLNIHFMRITPKVPKGVEIV-PLLLLHGWPGSV 642
           GL +HF+ + P  PK  + V P+L+ HGWPG+V
Sbjct: 125 GLQVHFLHVKP--PKSYKNVKPILVAHGWPGNV 155


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 547 GLNIHFMRI-TPKVPKGVEIVPLLLLHGWPGS 639
           GL IHF+R+ TP   K   +VPLL+ HG+PGS
Sbjct: 119 GLKIHFLRVSTPPKDKKSRVVPLLIFHGFPGS 150



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/93 (26%), Positives = 43/93 (46%)
 Frame = +3

Query: 267 DLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYGFXSK 446
           D +++W   +  +K D +I  F I   E+ V   KE+++  R F P L    +       
Sbjct: 34  DPDDYWKLDD-PEKDDDTIYSFTIDIKESEVSNFKEKLESER-FLPTLYDTNY-----DN 86

Query: 447 QLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQ 545
            L+  LK     + + + Q FLN +  +KT I+
Sbjct: 87  YLNE-LKQVLLGFNWKQHQHFLNTFKQYKTEIE 118



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = +2

Query: 647 EFYEAIPHLTAVSQ-------DRXFALEIIAPSLPGYGFSDAAVRPGLAAAEVAXI 793
           +F++ IP LT  S+       +     E+I PSLPG+ FSD   + G  A   A I
Sbjct: 153 DFFKIIPILTNPSRHGFDFGVEEAIQFEVIVPSLPGFIFSDKPTKQGFNAIATARI 208


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 405 PLEGVGFKYGFXSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNIQXFEYSLHEDYSK 581
           P EG G +  F  +Q      ++ E Y F   +  +NQ+ HFK      +  L ED  K
Sbjct: 175 PTEGDGIEDLFQLEQFQKSRDFYMESYAFDTTKTSINQFFHFKRFKIKVDKLLKEDAIK 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,295
Number of Sequences: 27780
Number of extensions: 331423
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)