Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A09
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.52 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.92 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 718 SDNFQSKXPVLADSCEMRNGFVELP*QSPAI 626
           SD    K P   D+ E RNG V  P  +PA+
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLFTPAV 590


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 631 PGSVRGVLRSHSSSHSCQPRQXLCSGNYRSKFT 729
           PG VR   R +  +  C+P Q   SG Y S ++
Sbjct: 410 PGRVR---RRYQPAFRCKPSQRFASGRYYSAYS 439


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 139 CQCVLISASXCHVFCLSSCRC 201
           C C    A  C + C + C+C
Sbjct: 747 CHCCDFDACDCEMTCPAGCKC 767


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 492 AERQKFLNQYPHFKTNIQXFEYSLHEDYS 578
           A  ++ LN YP F+ N+Q     + E YS
Sbjct: 637 ASMKENLNVYPEFQENVQLCS-EISESYS 664


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 356 HRLTESDLEGFDAGI 312
           +RLT+  L+G+DAG+
Sbjct: 7   YRLTKYLLDGYDAGV 21


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 297  LKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGV 419
            L +  ++S  P +      +   +K++  KRR   P LEGV
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRKEPPWLEGV 1003


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,995
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)