Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP08_F_A04
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 30 0.50
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 29 1.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 6.1
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 6.1
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 6.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 8.1
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.1
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 29.9 bits (64), Expect = 0.50
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +3
Query: 255 PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHR 434
P+AP + P +D L P + R V N + + I SH +DQ +
Sbjct: 88 PKAPRNDYLQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSH------VDQISDIKH 141
Query: 435 NTRDLRFLYPRGKLPVPTLPPFNPKPI 515
NT ++ +PT P NP+P+
Sbjct: 142 NTSEI------SSTMIPTTPSKNPEPV 162
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 534 RYRRHASEDQEELRQYNEHFLIPRDIF 614
RY+R ASE E L +++ HF I +F
Sbjct: 99 RYKRDASESDELLNEFSNHFGISDPLF 125
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +3
Query: 285 ILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLYP 464
+LPS + D L +R + N S++H +I + HR + + P
Sbjct: 2310 VLPSDLRDELLFQEAVQMRLFDHATRNNNSVDHEVEMEEIDQGGTVSEHRE----KSVKP 2365
Query: 465 RGKLPVPTL 491
K+PVP L
Sbjct: 2366 VKKIPVPNL 2374
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 348 TNPENNEA-SIEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFN 503
TN NE S H T+ +G D+ + + +YP K+ TLP N
Sbjct: 446 TNYTANEVVSDVFGHRTLTVGADKTLTASMTNGYPLIMYPHSKMSGFTLPTVN 498
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 176 ANTAPDNTYSAXSWPGTAMAVSRXXCSSCAKYRRPSD 286
A+ N+ S+ ++ A A+SR CS C K ++ D
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCD 353
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 379 SMDASLFSGLVTL--RTYLRFGSSCTSSIFEGRIGWSAVLGA 260
S + SLFS R RF F G++GW +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 485 WNRQFPSRVQKPQVPCVTVALDRLVKSNINCMM*MFNGRLVIFWI 351
W + + K +P V++A KSN N + ++ G + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 309 RRRFSKEESDGLRYLAHEE-HXHLDTAIAVP 220
RRR+SK+ S L + +EE H L + I +P
Sbjct: 946 RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +1
Query: 313 SSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLFQRF 492
SSI + I + T R ++I ++ L ++LTS S + T L G LF
Sbjct: 326 SSISFAALTLFGLIPEFTNRRMDIALVGLAINLTSGSLIAFAKPT--HAQLAGYWLF--- 380
Query: 493 LRLTPSQYILIWETVTDDMRRRIKK 567
++P YI I ++ + KK
Sbjct: 381 -GISPIPYICILSCISSNSAGHTKK 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,015
Number of Sequences: 5004
Number of extensions: 61971
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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