Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A04
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    31   0.92 
07_01_0799 - 6273520-6274008,6274137-6274151                           30   2.8  
01_05_0560 - 23288078-23288370,23288448-23288733                       30   2.8  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   3.7  
01_01_0206 - 1770622-1771347                                           29   4.9  
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    29   6.5  
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    29   6.5  
12_02_1193 + 26891619-26892456,26892545-26893884                       28   8.5  
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     28   8.5  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 255  PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 395
            P  P T  H I  S +DD+     R  VR   +P+N ++ +  S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110


>07_01_0799 - 6273520-6274008,6274137-6274151
          Length = 167

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 217 PAXRTVRVIGRCVGGGTEGRLDEPLARSLSKE 122
           P  RT+ V G+C+GGG  G +DE + R   ++
Sbjct: 67  PRCRTM-VKGQCIGGGAAGNVDEQVWRDCCRQ 97


>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 252 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 344
           +PR P  A H +L S  DDV  DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 152 IQPTFSATANTAPDNTYSAXSWPGTAMAVSRXXCSSCAKYRRP 280
           +QP+   TAN  P N  S  S P  ++A ++  CSS A    P
Sbjct: 153 VQPSIIVTANPPPRNVVSTTSVPQNSIA-AKLACSSVAAASPP 194


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 456 LYPRGKL-PVPTLPPFNPKP 512
           L+  GKL PVP LPP +PKP
Sbjct: 68  LFAGGKLLPVPPLPPVHPKP 87


>09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570,
            19766666-19768450,19768533-19768721,19768816-19768958,
            19769075-19769320,19769975-19770059,19770117-19770191,
            19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 480  VPTLPPFNPKPIYIDMGNRYRRHASED-QEELRQYNEHFL 596
            +P LP  NP+P+  D G      AS+D  E+L      F+
Sbjct: 1119 LPELPELNPEPMVTDNGENAAMPASDDIPEQLEVVKRRFM 1158


>06_03_0640 - 23059473-23060489,23060592-23060651,23063163-23063283,
            23063476-23065496
          Length = 1072

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 435  NTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQ--EELRQYN 584
            N  +L     R  +P P LPP  P P++  M   +++H  + Q  + ++QY+
Sbjct: 936  NQSNLNLQQTRHAIPQPPLPP--PGPVHQQMHAYHQQHQQQQQHYQSIQQYH 985


>12_02_1193 + 26891619-26892456,26892545-26893884
          Length = 725

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +3

Query: 207 RQAGQXPLWLYQGXXVPRA-PSTADHPILPSK---IDDVQLDPNRRYV--RSVTNPENNE 368
           RQA     W+Y G   PRA P  AD    PS+      V+L P +R V   S ++ ++ +
Sbjct: 308 RQAAGRANWVYNGELPPRANPQKADDEAGPSQKRMRGQVKLAPKKRRVPPSSDSDADDED 367

Query: 369 ASIEH 383
            + EH
Sbjct: 368 DAEEH 372


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 137 SCQXFIQPTFSATANTAPDNTYSAXSWPGTAMAVSRXXC 253
           +C  ++ PT SA   T   N +   S PGT     R  C
Sbjct: 105 ACADWVMPTSSAPRQTLSSNIHRNSSRPGTPAPSGRLLC 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,178,583
Number of Sequences: 37544
Number of extensions: 428778
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)