Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A04
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              25   0.69 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              25   0.69 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.7  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 558 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECXPIFIESXLL 686
           + E+ ++YNE  L   +I  E G F++  + E   I+++  ++
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVI 97


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 558 DQEELRQYNEHFLIPRDIFQE*GKFQKQKISECXPIFIESXLL 686
           + E+ ++YNE  L   +I  E G F++  + E   I+++  ++
Sbjct: 55  EDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDENVI 97


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 266 KYRRPSDSSFENRRRAARSK 325
           KYR  S   F +RR   RSK
Sbjct: 291 KYRETSKERFRDRRERERSK 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,452
Number of Sequences: 438
Number of extensions: 4976
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)