Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A03
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   138   7e-34
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   138   7e-34

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  138 bits (335), Expect = 7e-34
 Identities = 69/120 (57%), Positives = 78/120 (65%)
 Frame = +3

Query: 87  LPXSXGXRRGTXXLFARRFRTHGXXPLSTYMXVYKVGAXVXIXGXGAVQKGMPHKVYHGK 266
           +P S G R  T   F R FR HG   LSTY+  YKVG  V I   GAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 267 XGRVYNVTAHALGVIVNKRVRGRIIPKRXNIRVEXVKHSKCRXDFLKRVXENERLLKEAK 446
            G VYNVT  ++GV++ K V  R + KR N+R+E VKHSKCR DFL RV  NE   KEAK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 436 RKPRXAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 555
           ++ +  GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 117 KEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  138 bits (335), Expect = 7e-34
 Identities = 69/120 (57%), Positives = 78/120 (65%)
 Frame = +3

Query: 87  LPXSXGXRRGTXXLFARRFRTHGXXPLSTYMXVYKVGAXVXIXGXGAVQKGMPHKVYHGK 266
           +P S G R  T   F R FR HG   LSTY+  YKVG  V I   GAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 267 XGRVYNVTAHALGVIVNKRVRGRIIPKRXNIRVEXVKHSKCRXDFLKRVXENERLLKEAK 446
            G VYNVT  ++GV++ K V  R + KR N+R+E VKHSKCR DFL RV  NE   KEAK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 436 RKPRXAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 555
           ++ +  GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 117 KEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,978
Number of Sequences: 5004
Number of extensions: 28466
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)