Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A03
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0310 - 16669565-16669822,16670558-16670794                      126   2e-29
03_01_0290 + 2246791-2247027,2248089-2248346                          124   1e-28
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230...    28   8.4  
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694...    28   8.4  

>10_08_0310 - 16669565-16669822,16670558-16670794
          Length = 164

 Score =  126 bits (305), Expect = 2e-29
 Identities = 60/120 (50%), Positives = 79/120 (65%)
 Frame = +3

Query: 87  LPXSXGXRRGTXXLFARRFRTHGXXPLSTYMXVYKVGAXVXIXGXGAVQKGMPHKVYHGK 266
           +P   G R  T  LFAR FR  G  PL+TY+  YK+G  V +   GAV KGMPHK YHG+
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60

Query: 267 XGRVYNVTAHALGVIVNKRVRGRIIPKRXNIRVEXVKHSKCRXDFLKRVXENERLLKEAK 446
            GRV+NVT  A+GV +NK+V  RII KR ++RVE V+ S+C  +F  R  +N++L  +AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120


>03_01_0290 + 2246791-2247027,2248089-2248346
          Length = 164

 Score =  124 bits (298), Expect = 1e-28
 Identities = 59/120 (49%), Positives = 78/120 (65%)
 Frame = +3

Query: 87  LPXSXGXRRGTXXLFARRFRTHGXXPLSTYMXVYKVGAXVXIXGXGAVQKGMPHKVYHGK 266
           +P   G R  T  LFAR FR  G  PL+TY+  YK+G  V +   GAV KGMPHK YHG+
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 267 XGRVYNVTAHALGVIVNKRVRGRIIPKRXNIRVEXVKHSKCRXDFLKRVXENERLLKEAK 446
            GRV+NVT  A+GV +NK+V  RII KR ++RVE V+ S+C  +   R  +N++L  +AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120


>08_01_0283 -
           2304024-2304111,2304224-2304343,2304594-2304715,
           2304824-2305096,2305454-2305558,2305635-2305851,
           2306012-2306262,2306518-2306724,2307087-2307351,
           2308655-2308749
          Length = 580

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 194 WSXCXHQXXWCXSKGYATQSIPWKXRSRVQRDCS 295
           W    H   W     YAT+ I W+ R+ V  D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568


>03_02_0263 -
           6948618-6948818,6948909-6948971,6949078-6949146,
           6949232-6949297,6949380-6949526,6949608-6949702,
           6949845-6950016,6952187-6952318,6953581-6953674,
           6954067-6954184,6955884-6957057
          Length = 776

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 281 QRDCSCSRCDCQQACSRKDYTEAXQYPC 364
           Q  C C  C C  +  RKD   A +Y C
Sbjct: 391 QDTCGCMMCKCIYSDQRKDIVLADKYTC 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,542
Number of Sequences: 37544
Number of extensions: 221673
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)