Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP08_F_A03
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   146   2e-35
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  146 bits (353), Expect = 2e-35
 Identities = 71/121 (58%), Positives = 81/121 (66%)
 Frame = +3

Query: 96  SXGXRRGTXXLFARRFRTHGXXPLSTYMXVYKVGAXVXIXGXGAVQKGMPHKVYHGKXGR 275
           S G RRGT  +FAR FR HG   LSTY   YK G  V I   GA QKGMP K YHG+ GR
Sbjct: 4   SKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGR 63

Query: 276 VYNVTAHALGVIVNKRVRGRIIPKRXNIRVEXVKHSKCRXDFLKRVXENERLLKEAKXCR 455
           ++NVT  A+G+IVNKRVRG I+PKR NIR+E +K SKCR DFL RV  N+   K AK   
Sbjct: 64  IFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAG 123

Query: 456 Q 458
           Q
Sbjct: 124 Q 124



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 445 RXAGKTVN-LKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 564
           + AG+ V  LKR P  P+ AH + +   +P LLAP+ +E VA
Sbjct: 120 KSAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 271 PXFPWYTLCGIPF*TAPXPLMXTXAPTLYTXMYVESGXXPXVRNLR 134
           P FP Y+  G+P    P P      P     M V+    P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 271 PXFPWYTLCGIPF*TAPXPLMXTXAPTLYTXMYVESGXXPXVRNLR 134
           P FP Y+  G+P    P P      P     M V+    P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 271 PXFPWYTLCGIPF*TAPXPLMXTXAPTLYTXMYVESGXXPXVRNLR 134
           P FP Y+  G+P    P P      P     M V+    P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 466 NLKRQPAPPKAAHIVSGTE 522
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,953
Number of Sequences: 27780
Number of extensions: 174556
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)