Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P24
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    27   3.5  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   4.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   8.1  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   8.1  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    26   8.1  

>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 257 MINLLNMDGIMNDDNDKVILASRFCKD-YIRGSCARENCKFIHEKPPRTLL 406
           ++NL+ + GI+N   D+     + C D +I    +   CK I  +    L+
Sbjct: 70  LVNLIGLSGIVNSTGDEQKKLDKICNDIFITAMKSNGCCKLIVSEEEEDLI 120


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 162 EYRNNNNNEWISICEKCYK 218
           ++ +NNNN+W S+ + C++
Sbjct: 193 KWDSNNNNDWSSLMKDCFR 211


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 145 NFLDLMSTETTIIMSGYQYVKNAI 216
           N  +L+ST     + GY+YVK AI
Sbjct: 305 NVFELLSTSLAPSIYGYEYVKQAI 328


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 329 CKDYIRGSCARENCKFIH 382
           C+ ++ G C   NC+++H
Sbjct: 264 CRYFLLGKCNNPNCRYVH 281


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 118 HSSFVLIILNFLDLMSTETTIIMS-GYQ 198
           H+S ++ + +++DLMS ET  +M  GYQ
Sbjct: 142 HTSELMSVTSWIDLMSGETWNVMKIGYQ 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,763
Number of Sequences: 5004
Number of extensions: 51286
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)