Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P24
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283...    41   0.001
02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090     31   1.6  
06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516     30   2.8  
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           29   3.7  
06_03_0300 + 19299378-19299688,19299839-19300268                       29   3.7  
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649...    28   8.5  
04_03_0075 + 10726807-10727721,10728756-10729496                       28   8.5  

>04_03_1028 -
           21827961-21827972,21828018-21828112,21828286-21828361,
           21828921-21829037,21829532-21829621,21830011-21830056,
           21831407-21831502,21831599-21832008
          Length = 313

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 329 CKDYIRGSCAR--ENCKFIHEKPPRTLLKELFRFCHDYXNKGCYRTNCKFLH 478
           C+D+ RG C+R    C+F+H  P    L++    C D+    C R +C++ H
Sbjct: 186 CRDFTRGRCSRSANECRFLHHSP----LEDCAIVCQDFLRGRCDRKSCRYSH 233



 Score = 34.7 bits (76), Expect = 0.098
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 278 DGIMNDDNDKVILASRFCKDYIRGSCAREN--CKFIHEKPPRTLLKE-LFRFCHDYXNKG 448
           DG     ND   L    C+D++R  CAR +  CK+ H  P   + ++     C D     
Sbjct: 95  DGKRRRHND---LNVEVCRDFLRDRCARADIECKYAHPHPTVAVDRDSKVTACADSLRNN 151

Query: 449 CYR-TNCKFLH 478
           C+R   C++ H
Sbjct: 152 CFRGRTCRYYH 162



 Score = 31.9 bits (69), Expect = 0.69
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 329 CKDYIRGSCARENCKFIH 382
           C+DY++  C RE+C+F H
Sbjct: 287 CRDYLKNMCNRESCRFAH 304


>02_03_0006 - 13868590-13869593,13869887-13870156,13870487-13871090
          Length = 625

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 371 YNSREHSYHEYNLYRIC*QELLYRC 297
           Y SR H + E  LYR+C   LL RC
Sbjct: 33  YESRRHIWDETYLYRVCSDGLLRRC 57


>06_03_0225 - 18413668-18413751,18414641-18415493,18417497-18417516
          Length = 318

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 374 IYNSREHSYHEYNLYRIC*QELLYRC 297
           IY SR H ++   LYR+C   LL RC
Sbjct: 119 IYKSRGHLWYAPYLYRVCSDGLLRRC 144


>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 8/20 (40%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +2

Query: 329 CKDYIRGSCAR-ENCKFIHE 385
           C D+++G C+R  NC+++H+
Sbjct: 320 CHDFVKGRCSRGANCRYVHD 339


>06_03_0300 + 19299378-19299688,19299839-19300268
          Length = 246

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 374 IYNSREHSYHEYNLYRIC*QELLYRC 297
           IY SR H +    LYR+C   LL RC
Sbjct: 47  IYESRRHLWDAPYLYRVCSDGLLRRC 72


>06_03_0049 +
           15961706-15962017,15962952-15963851,15964769-15964913,
           15964969-15965705
          Length = 697

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 371 YNSREHSYHEYNLYRIC*QELLYRC 297
           Y S  H + E  LYR+C   LL RC
Sbjct: 32  YESHRHIWDEPYLYRVCSDGLLRRC 56


>04_03_0075 + 10726807-10727721,10728756-10729496
          Length = 551

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 371 YNSREHSYHEYNLYRIC*QELLYRC 297
           Y SR H + E  LY +C   LL RC
Sbjct: 400 YESRRHIWDEAYLYTVCSDGLLRRC 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,927
Number of Sequences: 37544
Number of extensions: 337266
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)