Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P24
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical ...    54   1e-07
U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical pr...    43   2e-04

>AC024809-7|AAF59540.1|  315|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.9 protein.
          Length = 315

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 329 CKDYIRGSCAR-ENCKFIHEKPPRTLLKELFRFCHDYXNKGCYRTNCKFLHS 481
           C+D+++  C R   CKF H      +    + FC DY N+GC R NC+F+H+
Sbjct: 59  CRDFLKNICNRGSRCKFYHPSEAPPISDHDYNFCIDYQNRGCQRDNCRFVHA 110



 Score = 31.9 bits (69), Expect = 0.62
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 326 FCKDYIRGSCARENCKFIH 382
           FC DY    C R+NC+F+H
Sbjct: 91  FCIDYQNRGCQRDNCRFVH 109


>U67957-1|AAB07587.2|  324|Caenorhabditis elegans Hypothetical
           protein K02H8.1 protein.
          Length = 324

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +2

Query: 329 CKDYIRGSCAR--ENCKFIHEKPPRTLLKELFRFCHDYXNKGCYRTN--CKFLH 478
           C++++RG CAR  + CKF H  P   + +     C+D     C R N  CK+LH
Sbjct: 44  CREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSIKGRCTRENPKCKYLH 97



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 329 CKDYIRGSCAREN--CKFIHEKPPRTLLKEL 415
           C D I+G C REN  CK++H  PP+ +  +L
Sbjct: 78  CYDSIKGRCTRENPKCKYLH--PPQHIKDQL 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,410
Number of Sequences: 27780
Number of extensions: 307342
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)