Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P23
         (1117 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   1.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   1.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   5.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   9.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 666 GGGXGGGGXXGAGXGGG 616
           GGG GGG     G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 636 GAGXGGGGGGXXXRGGG 586
           G G GGG  G    GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 554 PNXXXXGGXXPPPPLXXXPPPPPPXPAPXXPPPPXPPPXXXP 679
           P+    G   PP        PP P   P   PP  PP    P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 923 PXPXXXPPPNPPXXPP 970
           P P   P P PP  PP
Sbjct: 176 PLPQVPPLPLPPIFPP 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 632 APXXPPPPXPPP 667
           +P  PP P PPP
Sbjct: 94  SPTTPPTPSPPP 105


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 608 PPPPPPXPAPXXPPPPXPP 664
           PP P P P       P PP
Sbjct: 250 PPTPKPRPTKVSRRKPRPP 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,452
Number of Sequences: 336
Number of extensions: 4255
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 32269361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)