Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P22
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.69 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.7  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.7  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   8.5  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    26   8.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 15/59 (25%), Positives = 16/59 (27%)
 Frame = +2

Query: 716 PXPPQSPXMXPXXXLAXPXXXIXXPLPXTXPXXPQTSXXPXXPLGXPXPXXXPPPPXXP 892
           P PP  P   P          +    P   P  P     P  P G P     PP    P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/54 (31%), Positives = 17/54 (31%)
 Frame = +2

Query: 722 PPQSPXMXPXXXLAXPXXXIXXPLPXTXPXXPQTSXXPXXPLGXPXPXXXPPPP 883
           PP  P   P      P   I  PLP   P  P     P  P   P P   P  P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP--PLPPAAPAPPPAPAPAPAAP 487


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +2

Query: 800  TXPXXPQTSXXP--XXPLGXPXPXXXPPPPXXP 892
            T P  PQ++  P    P   P P   PPPP  P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +2

Query: 227  LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 406
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y  +  +   Y  +  
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184

Query: 407  L 409
            L
Sbjct: 1185 L 1185


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 281 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 165
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 383 AKYPGLTVLLSVGGDADTEEPXKYXLLLESQQARTAFINSGVL 511
           AK  G   ++ VGG ++ E   K   ++++  A  A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 359 YRAITSLKAKYPGLTVLLSVGGDADTEEPXKYXLLLESQQARTAFINSGVL 511
           YRA+  ++ KYP   ++L+ G      +  +  L L++  A  A +N  VL
Sbjct: 39  YRAMKYIREKYPNFPIVLATGKQRSAVDLIRIPLDLDAFPA--AHVNGCVL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,006
Number of Sequences: 5004
Number of extensions: 44036
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)