Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P21
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.67 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.67 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.67 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   2.1  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   4.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   8.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   8.3  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 193 NDRNGYEPIDNRPYIVNPPKD-YNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 357
           N+R  Y+  +++ Y   P +D YN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 100 NNRTYYK--NSQGYRRKPKRDDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 393 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 277
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 815 PPPPPGXXXFXFXGAPXSPXPPPXXS 892
           PPPPP        G P  P PPP  S
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 206 ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLPLSL 355
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 247 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 345
           PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 46  PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 279  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 386
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 815 PPPPPGXXXFXFXGAPXSPXPP 880
           PPPPP    F     P  P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 15  RSHYREFLKILSTTLIFSACDNS*SYKN 98
           RSH  EFL+IL+   I +  DNS S+ +
Sbjct: 261 RSHRNEFLRILTEFNIPNKLDNSASFSD 288


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +2

Query: 197 TETATNLLTTAR-TSLILPKITTLMETATNL--STTVHITWTLP 319
           TET+T+ +T+   TS++ P  T+   T T +  +T+++ T T+P
Sbjct: 54  TETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVP 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,672
Number of Sequences: 5004
Number of extensions: 57967
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)