Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_P21
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.1
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.1
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 30 2.6
AF100656-6|AAF99961.1| 240|Caenorhabditis elegans Hypothetical ... 30 2.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 29 5.9
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 28 7.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +2
Query: 701 PXXPREXPX*PQTIGPSFFXSXSPXEXXGEGFFPA*XXPPPPPGXXXFXFXGAPXSPXPP 880
P P P P + P+ + P G +P PPPPPG G P P PP
Sbjct: 265 PPPPSVTPM-PPPMPPTPGMTPRPPPPPSSGMWPP--PPPPPPGRTPGP-PGMPGMPPPP 320
Query: 881 P 883
P
Sbjct: 321 P 321
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +2
Query: 701 PXXPREXPX*PQTIGPSFFXSXSPXEXXGEGFFPA*XXPPPPPGXXXFXFXGAPXSPXPP 880
P P P P + P+ + P G +P PPPPPG G P P PP
Sbjct: 275 PPPPSVTPM-PPPMPPTPGMTPRPPPPPSSGMWPP--PPPPPPGRTPGP-PGMPGMPPPP 330
Query: 881 P 883
P
Sbjct: 331 P 331
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPP GAP P PPP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPP 583
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPP GAP P PPP
Sbjct: 634 PPPPPMGLPAVGAGAPPPPPPPP 656
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPP GAP P PPP
Sbjct: 460 PPPPPMGLPAVGAGAPPPPPPPP 482
>AF100656-6|AAF99961.1| 240|Caenorhabditis elegans Hypothetical
protein F49F1.7 protein.
Length = 240
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = +2
Query: 179 TQL*SMTETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSSLP 346
TQ TET TT TT T STTV T T PK T S P
Sbjct: 153 TQTTKSTETTETTETTKAIKTTKTTETTKATKTTTPSTTVKTTTTKPKPPCTDSSP 208
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPPG G P P PPP
Sbjct: 744 PPPPPGGLP-PISGGPPPPPPPP 765
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPP 880
PPPPP F G P P PP
Sbjct: 769 PPPPPPPPPGGFKGGPPPPPPP 790
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 814 PPPPPGXXXXXLFXRPXFPXXPPXG 888
PPPPP + P P PP G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 799 PXLXXPPPPPG 831
P PPPPPG
Sbjct: 708 PITGGPPPPPG 718
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPPG G P P PPP
Sbjct: 744 PPPPPGGLP-PISGGPPPPPPPP 765
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPP 880
PPPPP F G P P PP
Sbjct: 769 PPPPPPPPPGGFKGGPPPPPPP 790
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 814 PPPPPGXXXXXLFXRPXFPXXPPXG 888
PPPPP + P P PP G
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 21.8 bits (44), Expect(2) = 7.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 799 PXLXXPPPPPG 831
P PPPPPG
Sbjct: 708 PITGGPPPPPG 718
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPPG G P P PPP
Sbjct: 327 PPPPPGGLP-PISGGPPPPPPPP 348
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPP 880
PPPPP F G P P PP
Sbjct: 352 PPPPPPPPPGGFKGGPPPPPPP 373
Score = 24.6 bits (51), Expect(2) = 8.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 814 PPPPPGXXXXXLFXRPXFPXXPPXG 888
PPPPP + P P PP G
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 799 PXLXXPPPPPG 831
P PPPPPG
Sbjct: 291 PITGGPPPPPG 301
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Frame = -1
Query: 508 GGWGXGCFXSTTICLF--IYSVDI--NSYEILK 422
GG G GCF ++ CLF IY+V +S+EI+K
Sbjct: 193 GGPGCGCFYPSSGCLFYRIYAVPTTNDSFEIMK 225
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +2
Query: 140 PTLKTQLR*WKTLTQL*SMTETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 319
P + T +R T T + T A N+ TT T+ I P T T +TTV T T P
Sbjct: 17 PVITTTIRPNSTTT---TTTSPAPNITTTTTTTTIAPPTNTTTTILTT-TTTVTTTTTSP 72
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 815 PPPPPGXXXFXFXGAPXSPXPPP 883
PPPPP AP P PPP
Sbjct: 69 PPPPPPPLISILQQAPPPPPPPP 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,651
Number of Sequences: 27780
Number of extensions: 405338
Number of successful extensions: 1371
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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