Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P19
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.1  

>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
 Frame = +3

Query: 573 PPSPX-PPPPLXXXXXGGGGGXFFSHXXGGXVXXLPPPPXL-XXPPXXLTTPPXAXP 737
           PPS   PPP L           FF          +PPPP      P  + +P  + P
Sbjct: 386 PPSAVAPPPGLGNHNFSNDDSSFFRSLMTSDTRSVPPPPGFSTNAPKAVKSPEISAP 442


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 537 PPXXLPXKKKXXPPSPXPPPP 599
           PP   P      PP P PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/55 (27%), Positives = 16/55 (29%)
 Frame = +3

Query: 573 PPSPXPPPPLXXXXXGGGGGXFFSHXXGGXVXXLPPPPXLXXPPXXLTTPPXAXP 737
           PP P PPPP               +  G  V    PP         L  PP   P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPP 243


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 537 PPXXLPXKKKXXPPSPXPPPPL 602
           PP   P +    PPSP   PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPI 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,629
Number of Sequences: 5004
Number of extensions: 22744
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)