Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P14
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 478 PPPPXGGXXXXPPPPXGGXXLFFXXKXGGXGXPPPP 585
           PP P  G    PPPP G           G G PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPG---------VAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 669 PRXGGRXPPXPPLXKXQPXPXGRPPPP 749
           P  GG  PP PP       P   PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 479 PPPXGGXXXXPPPPP 523
           PPP G     PPPPP
Sbjct: 765 PPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 23/101 (22%), Positives = 23/101 (22%), Gaps = 4/101 (3%)
 Frame = +2

Query: 461 PXGGXXPPPXGGXXXX--PPPPPXG--GXXFFXXKXXGGXGXPPPPXTQKXXGXXXXXXX 628
           P  G  PPP         PP PP    G         G       P              
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429

Query: 629 XXPPKXXKKXKXXTPXRGPXPPXXPSXKXXTXXXRPAPPTP 751
             PP          P   P PP  P           APP P
Sbjct: 430 SLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 681 GRXPPXPPLXKXQPXPXGRPPPP 749
           G  PP PP    +P     PPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,501
Number of Sequences: 5004
Number of extensions: 36142
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)