Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P13
         (911 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   8e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    48   4e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.013
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    42   0.022
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    41   0.050
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.088
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    39   0.20 

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.0 bits (114), Expect = 8e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +1

Query: 313 RGEAVCVLGALPLPRSLTRCARSFGCXERYQLT 411
           R   +C  G +PLPRSLTR ARSFGC ERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 23/34 (67%), Positives = 24/34 (70%)
 Frame = +1

Query: 289 CINESANARGEAVCVLGALPLPRSLTRCARSFGC 390
           CI + A AR EAV VL ALPL RS TRC RS GC
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGC 299


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.013
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 91  DPDMIRYIDEFGQTTTXMQ 147
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 41.9 bits (94), Expect = 0.022
 Identities = 20/31 (64%), Positives = 20/31 (64%)
 Frame = -3

Query: 468 TCXXXRYXLIXXITVXPPLSELIPLXAAERP 376
           TC    Y LI  ITV PPLSEL PL A ERP
Sbjct: 26  TCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 40.7 bits (91), Expect = 0.050
 Identities = 21/30 (70%), Positives = 22/30 (73%)
 Frame = +3

Query: 378 VVRLXXAVSAHSKAVXXLSXQSXDNAXXNM 467
           VVRL  AVSAHSKAV  LS +S DNA  NM
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.088
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 359 ERGSGRAPNTQTASPRALADSLMQ 288
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.7 bits (86), Expect = 0.20
 Identities = 21/41 (51%), Positives = 25/41 (60%)
 Frame = +2

Query: 215 INKLTTTIAFILCFRFRGEVWEVFSALMNXPTRGERRFAYW 337
           +++LT      L  RF      V +ALMN PTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,148,340
Number of Sequences: 1657284
Number of extensions: 7672845
Number of successful extensions: 17610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17580
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83211448033
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)