Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P11
         (1005 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 661 PXXPPSPXXXXPPPPP 708
           P  PP+P    PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPP 765



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 669 PPXPXXXXPPPPPP 710
           PP P    PPPPPP
Sbjct: 753 PPAPIMGGPPPPPP 766


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 966 PXPPPPPXXP 995
           P PPPPP  P
Sbjct: 905 PTPPPPPPLP 914



 Score = 22.6 bits (46), Expect(2) = 4.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 693 PPPPPPL 713
           PPPPPPL
Sbjct: 948 PPPPPPL 954



 Score = 22.2 bits (45), Expect(2) = 4.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 678 PXXXXPPPPPP 710
           P    PPPPPP
Sbjct: 942 PAFPPPPPPPP 952



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 972  PPPPPXXPXL 1001
            PPPPP  P L
Sbjct: 945  PPPPPPPPPL 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,370,697
Number of Sequences: 5004
Number of extensions: 10797
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)