Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_P11
         (1005 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    29   6.9  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    29   6.9  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   9.1  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   9.1  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    24   9.5  

>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 661 PXXPPSPXXXXPPPPP 708
           P  PPSP    PPPPP
Sbjct: 134 PPPPPSPPPPPPPPPP 149


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
            protein Y40B1A.5 protein.
          Length = 134

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 963  TPXPPPPPXXPXLP 1004
            TP PPPPP  P LP
Sbjct: 21   TPPPPPPPAPPALP 34


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 669 PPXPXXXXPPPPPPL 713
           PP P    PPPPPP+
Sbjct: 67  PPPPPPMCPPPPPPM 81


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 669 PPXPXXXXPPPPPPL 713
           PP P    PPPPPP+
Sbjct: 74  PPPPPMPCPPPPPPM 88


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 23.8 bits (49), Expect(2) = 9.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 966  PXPPPPPXXPXL 1001
            P PPPPP  P L
Sbjct: 84   PPPPPPPPPPTL 95



 Score = 22.6 bits (46), Expect(2) = 9.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 963 TPXPPPPP 986
           TP PPPPP
Sbjct: 66  TPPPPPPP 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,957,531
Number of Sequences: 27780
Number of extensions: 118504
Number of successful extensions: 3394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2593
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)